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C6CYJ7 (C6CYJ7_PAESJ) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
L-arabinose isomerase HAMAP MF_00519
EC=5.3.1.4 HAMAP MF_00519
Gene names
Name:araA HAMAP MF_00519
Ordered Locus Names:Pjdr2_2502
OrganismPaenibacillus sp. (strain JDR-2) [Complete proteome] [HAMAP] EMBL ACT01157.1
Taxonomic identifier324057 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacillales › Paenibacillaceae › Paenibacillus

Protein attributes

Sequence length497 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the conversion of L-arabinose to L-ribulose By similarity. HAMAP MF_00519 SAAS SAAS003762

Catalytic activity

L-arabinose = L-ribulose. HAMAP MF_00519 SAAS SAAS003762

Cofactor

Binds 1 manganese ion per subunit By similarity. HAMAP MF_00519 SAAS SAAS003762

Pathway

Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3. HAMAP MF_00519 SAAS SAAS003762

Sequence similarities

Belongs to the arabinose isomerase family. HAMAP MF_00519

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding3071Manganese By similarity HAMAP MF_00519
Metal binding3321Manganese By similarity HAMAP MF_00519
Metal binding3491Manganese By similarity HAMAP MF_00519
Metal binding4481Manganese By similarity HAMAP MF_00519

Sequences

Sequence LengthMass (Da)Tools
C6CYJ7 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: 19998D16CFB71041

FASTA49755,654
        10         20         30         40         50         60 
MVLSIKPYQF WFVTGSQHLY GPETLEEVAV HSQSITAGLN ESSNLPFEIV YKPVVTTPEE 

        70         80         90        100        110        120 
IYKVCIEAKA DPNCAGVVAW MHTFSPAKMW IRGLSELRKP LLHLHTQYNR DIPWNSIDMD 

       130        140        150        160        170        180 
FMNTNQSAHG DREFGHIFAR LGLDRKVVTG HWQDGEVQSR IGAWMNSAAA SMESKNLKIA 

       190        200        210        220        230        240 
RFGDNMRQVA VTEGDKVEAQ IQLGWQIDGY GIGDLVASMN EISDAEVQEL LNEYSERYEI 

       250        260        270        280        290        300 
ASSVRDNAAS WAAIEEQAKI ELGMKRFLQA GGYTAFTTTF EDLHGMKQLP GLAVQRLMEQ 

       310        320        330        340        350        360 
GYGFGGEGDW KTAALTRIMK LMAGNIGTSF MEDYTYHLEN GNEMILGAHM LEVCPTIAES 

       370        380        390        400        410        420 
KPRIEVHPLG IGGKADPARI IFDGKAGEAV NASLVDLGNR FRLIINEVDA VKVEKDMPNL 

       430        440        450        460        470        480 
PVARVLWKPR PSLRDSAEAW IYAGGAHHTV LSYVVTTDQL VDWADMLGIE VVVIDNNTTI 

       490 
RQFRQELRWN EQSYGRR

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References

[1]"Complete sequence of Paenibacillus sp. JDR-2."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Shanmugam K.T., Ingram L.O., Preston J.
Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JDR-2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001656 Genomic DNA. Translation: ACT01157.1.
RefSeqYP_003011243.1. NC_012914.1.

3D structure databases

ProteinModelPortalC6CYJ7.
SMRC6CYJ7. Positions 3-495.
ModBaseSearch...

Protein-protein interaction databases

STRINGC6CYJ7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8127136.
GenomeReviewsGene locus Pjdr2_2502 in contig CP001656_GR.
KEGGpjd:Pjdr2_2502.
PATRIC22835523. VBIPaeSp118865_2483.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMAEVCPTIA.
ProtClustDBPRK02929.

Family and domain databases

HAMAPMF_00519. Arabinose_Isome.
[Tree]
InterProIPR024664. Ara_Isoase_C.
IPR004216. Fuc/Ara_isomerase_C.
IPR009015. Fucose_isomerase_N/cen.
IPR003762. Lara_isomerase.
[Graphical view]
KOK01804.
PfamPF11762. Arabinose_Iso_C. 1 hit.
PF02610. Arabinose_Isome. 1 hit.
[Graphical view]
PIRSFPIRSF001478. L-ara_isomerase. 1 hit.
ProDomPD018364. Lara_isomerase. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50443. Fuc_isomerase_C. 1 hit.
SSF53743. Fuc_isomerase_N. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC6CYJ7_PAESJ
AccessionPrimary (citable) accession number: C6CYJ7
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: December 14, 2011
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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