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C6CVU1 (C6CVU1_PAESJ) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Pjdr2_1127 EMBL ACS99805.1
OrganismPaenibacillus sp. (strain JDR-2) [Complete proteome] [HAMAP] EMBL ACS99805.1
Taxonomic identifier324057 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus

Protein attributes

Sequence length287 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACS99805.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
C6CVU1 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: D9F32FCFF47EBE15

FASTA28733,543
        10         20         30         40         50         60 
MFISPMQPTK AEEPFNSEEF LFEPKLNGHR LIVSFINGQV KMYTRNNNEV ARQYPELFNV 

        70         80         90        100        110        120 
PVDSGVDVVF DGEVVRLRED GTNDFEELIQ RYRIGKATKI KDASRTHPVQ YYVFDILYLN 

       130        140        150        160        170        180 
GKSLAHLPLV KRKEILARIL KPSGYYHITM SIENEGRALF KVMEDKGLEG IVAKKKNSKY 

       190        200        210        220        230        240 
VSKRSENWLK VINYQYLEVS ICAYRRKEFG WLIEHEGRTV GCIEWTIPTD DRKAFYKRAQ 

       250        260        270        280 
SLVTGQDKHF VYVKPILKVV VRFRDWTSNH MLRTPEYVGF SGEQISL 

« Hide

References

[1]"Complete genome sequence of Paenibacillus sp. strain JDR-2."
Chow V., Nong G., St John F.J., Rice J.D., Dickstein E., Chertkov O., Bruce D., Detter C., Brettin T., Han J., Woyke T., Pitluck S., Nolan M., Pati A., Martin J., Copeland A., Land M.L., Goodwin L. expand/collapse author list , Jones J.B., Ingram L.O., Shanmugam K.T., Preston J.F.
Stand. Genomic Sci. 6:1-10(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JDR-2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001656 Genomic DNA. Translation: ACS99805.1.
RefSeqYP_003009892.1. NC_012914.1.

3D structure databases

ProteinModelPortalC6CVU1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING324057.Pjdr2_1127.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACS99805; ACS99805; Pjdr2_1127.
GeneID8124528.
KEGGpjd:Pjdr2_1127.
PATRIC22832787. VBIPaeSp118865_1120.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000049932.
KOK01971.
OMALYTRHNN.
OrthoDBEOG6F2971.
ProtClustDBPRK07636.

Enzyme and pathway databases

BioCycPSP324057:GH5H-1207-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6CVU1_PAESJ
AccessionPrimary (citable) accession number: C6CVU1
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: April 16, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)