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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Pjdr2_1127

Organism
Paenibacillus sp. (strain JDR-2)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPSP324057:GH5H-1207-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Pjdr2_1127Imported
OrganismiPaenibacillus sp. (strain JDR-2)Imported
Taxonomic identifieri324057 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
ProteomesiUP000002510 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi324057.Pjdr2_1127.

Structurei

3D structure databases

ProteinModelPortaliC6CVU1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000049932.
KOiK10747.
OMAiRGVEYRS.
OrthoDBiEOG6F2971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6CVU1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFISPMQPTK AEEPFNSEEF LFEPKLNGHR LIVSFINGQV KMYTRNNNEV
60 70 80 90 100
ARQYPELFNV PVDSGVDVVF DGEVVRLRED GTNDFEELIQ RYRIGKATKI
110 120 130 140 150
KDASRTHPVQ YYVFDILYLN GKSLAHLPLV KRKEILARIL KPSGYYHITM
160 170 180 190 200
SIENEGRALF KVMEDKGLEG IVAKKKNSKY VSKRSENWLK VINYQYLEVS
210 220 230 240 250
ICAYRRKEFG WLIEHEGRTV GCIEWTIPTD DRKAFYKRAQ SLVTGQDKHF
260 270 280
VYVKPILKVV VRFRDWTSNH MLRTPEYVGF SGEQISL
Length:287
Mass (Da):33,543
Last modified:September 1, 2009 - v1
Checksum:iD9F32FCFF47EBE15
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001656 Genomic DNA. Translation: ACS99805.1.
RefSeqiWP_015842752.1. NC_012914.1.

Genome annotation databases

EnsemblBacteriaiACS99805; ACS99805; Pjdr2_1127.
KEGGipjd:Pjdr2_1127.
PATRICi22832787. VBIPaeSp118865_1120.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001656 Genomic DNA. Translation: ACS99805.1.
RefSeqiWP_015842752.1. NC_012914.1.

3D structure databases

ProteinModelPortaliC6CVU1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi324057.Pjdr2_1127.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACS99805; ACS99805; Pjdr2_1127.
KEGGipjd:Pjdr2_1127.
PATRICi22832787. VBIPaeSp118865_1120.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000049932.
KOiK10747.
OMAiRGVEYRS.
OrthoDBiEOG6F2971.

Enzyme and pathway databases

BioCyciPSP324057:GH5H-1207-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JDR-2Imported.

Entry informationi

Entry nameiC6CVU1_PAESJ
AccessioniPrimary (citable) accession number: C6CVU1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: July 22, 2015
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.