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C6CST1

- C6CST1_PAESJ

UniProt

C6CST1 - C6CST1_PAESJ

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Protein

Transcription termination factor Rho

Gene
rho, Pjdr2_0140
Organism
Paenibacillus sp. (strain JDR-2)
Status
Unreviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei210 – 2101ATP By similarityUniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi167 – 1726ATP By similarityUniRule annotation
Nucleotide bindingi179 – 1846ATP By similarityUniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-HAMAP
  2. helicase activity Source: UniProtKB-HAMAP
  3. RNA binding Source: UniProtKB-HAMAP
  4. RNA-dependent ATPase activity Source: InterPro

GO - Biological processi

  1. DNA-templated transcription, termination Source: UniProtKB-HAMAP
  2. regulation of transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

HelicaseUniRule annotation, Hydrolase

Keywords - Biological processi

Transcription, Transcription regulation, Transcription terminationUniRule annotation

Keywords - Ligandi

ATP-binding, Nucleotide-binding, RNA-bindingUniRule annotation

Enzyme and pathway databases

BioCyciPSP324057:GH5H-151-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription termination factor RhoUniRule annotation (EC:3.6.4.-UniRule annotation)
Alternative name(s):
ATP-dependent helicase Rho
Gene namesi
Name:rhoUniRule annotation
Ordered Locus Names:Pjdr2_0140Imported
OrganismiPaenibacillus sp. (strain JDR-2)Imported
Taxonomic identifieri324057 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
ProteomesiUP000002510: Chromosome

Interactioni

Subunit structurei

Homohexamer. The homohexamer assembles into an open ring structure By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi324057.Pjdr2_0140.

Structurei

3D structure databases

ProteinModelPortaliC6CST1.
SMRiC6CST1. Positions 56-409.

Family & Domainsi

Sequence similaritiesi

Belongs to the Rho family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1158.
HOGENOMiHOG000076952.
KOiK03628.
OMAiEFMREKM.
OrthoDBiEOG6N681W.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
3.40.50.300. 1 hit.
HAMAPiMF_01884. Rho.
InterProiIPR003593. AAA+_ATPase.
IPR000194. ATPase_F1/V1/A1_a/bsu_nucl-bd.
IPR011129. Cold_shock_prot.
IPR012340. NA-bd_OB-fold.
IPR027417. P-loop_NTPase.
IPR011112. Rho_N.
IPR011113. Rho_RNA-bd.
IPR004665. Term_rho.
[Graphical view]
PfamiPF00006. ATP-synt_ab. 1 hit.
PF07498. Rho_N. 1 hit.
PF07497. Rho_RNA_bind. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
SM00357. CSP. 1 hit.
SM00959. Rho_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF68912. SSF68912. 1 hit.
TIGRFAMsiTIGR00767. rho. 1 hit.

Sequencei

Sequence statusi: Complete.

C6CST1-1 [UniParc]FASTAAdd to Basket

« Hide

MTDLQISDLE EMKLTELYKL AKQYQIPYYG QLKKKELIFA ILRAQAEKSG    50
LMFMQGVLET LPEGFGFLRP INYLPSKEDI YISASQIRKF DLRTGDLVSG 100
KCRLPKDSEK YFGLLQVNAV NGTDPAQAAE RLHFPALTPL YPQKKLVLET 150
ASSKLSTRIM DLLAPVGLGQ RGLIVAPPKA GKTLLLKEIA NSISTNHPDI 200
ELFVLLIDER PEEVTDMQRS VKGEVIASTF DEVPENHIKV AELVLERALR 250
LVEHKKDVVI LLDSITRLAR AYNLVVPPSG RTLSGGIDPA AFHRPKRFFG 300
AARNVEEGGS LTILATALIE TGSRMDDIIY EEFKGTGNME LHLDRKLAER 350
RIFPALDIRR SGTRREEMLL SKEELDKLWV VRRNMTDTPD FVDGFLKKLA 400
DSKTNEEFLM SLDTSEEKPA PQQRTSTGTG LKSSAATGRR PAPRTTHGS 449
Length:449
Mass (Da):50,231
Last modified:September 1, 2009 - v1
Checksum:i335223FC9B79B657
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001656 Genomic DNA. Translation: ACS98820.1.
RefSeqiWP_012772142.1. NC_012914.1.
YP_003008907.1. NC_012914.1.

Genome annotation databases

EnsemblBacteriaiACS98820; ACS98820; Pjdr2_0140.
GeneIDi8129237.
KEGGipjd:Pjdr2_0140.
PATRICi22830697. VBIPaeSp118865_0142.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001656 Genomic DNA. Translation: ACS98820.1 .
RefSeqi WP_012772142.1. NC_012914.1.
YP_003008907.1. NC_012914.1.

3D structure databases

ProteinModelPortali C6CST1.
SMRi C6CST1. Positions 56-409.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 324057.Pjdr2_0140.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACS98820 ; ACS98820 ; Pjdr2_0140 .
GeneIDi 8129237.
KEGGi pjd:Pjdr2_0140.
PATRICi 22830697. VBIPaeSp118865_0142.

Phylogenomic databases

eggNOGi COG1158.
HOGENOMi HOG000076952.
KOi K03628.
OMAi EFMREKM.
OrthoDBi EOG6N681W.

Enzyme and pathway databases

BioCyci PSP324057:GH5H-151-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
3.40.50.300. 1 hit.
HAMAPi MF_01884. Rho.
InterProi IPR003593. AAA+_ATPase.
IPR000194. ATPase_F1/V1/A1_a/bsu_nucl-bd.
IPR011129. Cold_shock_prot.
IPR012340. NA-bd_OB-fold.
IPR027417. P-loop_NTPase.
IPR011112. Rho_N.
IPR011113. Rho_RNA-bd.
IPR004665. Term_rho.
[Graphical view ]
Pfami PF00006. ATP-synt_ab. 1 hit.
PF07498. Rho_N. 1 hit.
PF07497. Rho_RNA_bind. 1 hit.
[Graphical view ]
SMARTi SM00382. AAA. 1 hit.
SM00357. CSP. 1 hit.
SM00959. Rho_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF68912. SSF68912. 1 hit.
TIGRFAMsi TIGR00767. rho. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JDR-2.

Entry informationi

Entry nameiC6CST1_PAESJ
AccessioniPrimary (citable) accession number: C6CST1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: September 3, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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