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C6CST1 (C6CST1_PAESJ) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Transcription termination factor Rho HAMAP-Rule MF_01884

EC=3.6.4.- HAMAP-Rule MF_01884
Alternative name(s):
ATP-dependent helicase Rho HAMAP-Rule MF_01884
Gene names
Name:rho HAMAP-Rule MF_01884
Ordered Locus Names:Pjdr2_0140 EMBL ACS98820.1
OrganismPaenibacillus sp. (strain JDR-2) [Complete proteome] [HAMAP] EMBL ACS98820.1
Taxonomic identifier324057 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus

Protein attributes

Sequence length449 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template By similarity. HAMAP-Rule MF_01884

Subunit structure

Homohexamer. The homohexamer assembles into an open ring structure By similarity. HAMAP-Rule MF_01884

Sequence similarities

Belongs to the Rho family. HAMAP-Rule MF_01884

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding167 – 1726ATP By similarity HAMAP-Rule MF_01884
Nucleotide binding179 – 1846ATP By similarity HAMAP-Rule MF_01884

Sites

Binding site2101ATP By similarity HAMAP-Rule MF_01884

Sequences

Sequence LengthMass (Da)Tools
C6CST1 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: 335223FC9B79B657

FASTA44950,231
        10         20         30         40         50         60 
MTDLQISDLE EMKLTELYKL AKQYQIPYYG QLKKKELIFA ILRAQAEKSG LMFMQGVLET 

        70         80         90        100        110        120 
LPEGFGFLRP INYLPSKEDI YISASQIRKF DLRTGDLVSG KCRLPKDSEK YFGLLQVNAV 

       130        140        150        160        170        180 
NGTDPAQAAE RLHFPALTPL YPQKKLVLET ASSKLSTRIM DLLAPVGLGQ RGLIVAPPKA 

       190        200        210        220        230        240 
GKTLLLKEIA NSISTNHPDI ELFVLLIDER PEEVTDMQRS VKGEVIASTF DEVPENHIKV 

       250        260        270        280        290        300 
AELVLERALR LVEHKKDVVI LLDSITRLAR AYNLVVPPSG RTLSGGIDPA AFHRPKRFFG 

       310        320        330        340        350        360 
AARNVEEGGS LTILATALIE TGSRMDDIIY EEFKGTGNME LHLDRKLAER RIFPALDIRR 

       370        380        390        400        410        420 
SGTRREEMLL SKEELDKLWV VRRNMTDTPD FVDGFLKKLA DSKTNEEFLM SLDTSEEKPA 

       430        440 
PQQRTSTGTG LKSSAATGRR PAPRTTHGS 

« Hide

References

[1]"Complete genome sequence of Paenibacillus sp. strain JDR-2."
Chow V., Nong G., St John F.J., Rice J.D., Dickstein E., Chertkov O., Bruce D., Detter C., Brettin T., Han J., Woyke T., Pitluck S., Nolan M., Pati A., Martin J., Copeland A., Land M.L., Goodwin L. expand/collapse author list , Jones J.B., Ingram L.O., Shanmugam K.T., Preston J.F.
Stand. Genomic Sci. 6:1-10(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JDR-2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001656 Genomic DNA. Translation: ACS98820.1.
RefSeqYP_003008907.1. NC_012914.1.

3D structure databases

ProteinModelPortalC6CST1.
SMRC6CST1. Positions 56-409.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING324057.Pjdr2_0140.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACS98820; ACS98820; Pjdr2_0140.
GeneID8129237.
KEGGpjd:Pjdr2_0140.
PATRIC22830697. VBIPaeSp118865_0142.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1158.
HOGENOMHOG000076952.
KOK03628.
OMANALTKPK.
OrthoDBEOG6N681W.
ProtClustDBCLSK2547483.

Enzyme and pathway databases

BioCycPSP324057:GH5H-151-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
3.40.50.300. 1 hit.
HAMAPMF_01884. Rho.
InterProIPR003593. AAA+_ATPase.
IPR000194. ATPase_F1/V1/A1_a/bsu_nucl-bd.
IPR011129. Cold_shock_prot.
IPR012340. NA-bd_OB-fold.
IPR027417. P-loop_NTPase.
IPR011112. Rho_N.
IPR011113. Rho_RNA-bd.
IPR004665. Term_rho.
[Graphical view]
PfamPF00006. ATP-synt_ab. 1 hit.
PF07498. Rho_N. 1 hit.
PF07497. Rho_RNA_bind. 1 hit.
[Graphical view]
SMARTSM00382. AAA. 1 hit.
SM00357. CSP. 1 hit.
SM00959. Rho_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF68912. SSF68912. 1 hit.
TIGRFAMsTIGR00767. rho. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC6CST1_PAESJ
AccessionPrimary (citable) accession number: C6CST1
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: April 16, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)