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C6CP22 (C6CP22_DICZE) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribonuclease PH HAMAP-Rule MF_00564
Short name=RNase PH HAMAP-Rule MF_00564
EC=2.7.7.56 HAMAP-Rule MF_00564
Alternative name(s):
tRNA nucleotidyltransferase HAMAP-Rule MF_00564
Gene names
Name:rph HAMAP-Rule MF_00564
Ordered Locus Names:Dd1591_3965
OrganismDickeya zeae (strain Ech1591) [Complete proteome] [HAMAP] EMBL ACT08765.1
Taxonomic identifier561229 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Dickeya ›

Protein attributes

Sequence length238 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. HAMAP-Rule MF_00564 SAAS SAAS002381

Catalytic activity

tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP-Rule MF_00564 SAAS SAAS002381

Sequence similarities

Belongs to the RNase PH family. HAMAP-Rule MF_00564

Sequences

Sequence LengthMass (Da)Tools
C6CP22 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: 6D93C282C713D3A3

FASTA23825,324
        10         20         30         40         50         60 
MRPTGRSAQQ IRPLTFTRHY TKHAEGSVLV EFGDTKVLCN ATVEEGVPRF LKGQGQGWIT 

        70         80         90        100        110        120 
AEYGMLPRST HSRNAREAAK GKQGGRTLEI QRLIARSLRA AVDLNKLGEY TITLDCDVLQ 

       130        140        150        160        170        180 
ADGGTRTASI TGACVALADA LNGLVAGGKL KASPLKGMVA AVSVGIVKGE AVCDLEYVED 

       190        200        210        220        230 
SAAETDMNVV MTEDGRMIEV QGTAEGEPFS HDELLSLLAL ARQGIEDIVR AQKAALAD

« Hide

References

[1]"Complete sequence of Dickeya zeae Ech1591."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Balakrishnan V., Glasner J., Perna N.T.
Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Ech1591.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001655 Genomic DNA. Translation: ACT08765.1.
RefSeqYP_003006244.1. NC_012912.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING561229.Dd1591_3965.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACT08765; ACT08765; Dd1591_3965.
GeneID8117570.
KEGGdze:Dd1591_3965.
PATRIC21804041. VBIDicZea111179_4031.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0689.
HOGENOMHOG000229516.
KOK00989.
OMAMLPRATG.
ProtClustDBCLSK2814855.

Enzyme and pathway databases

BioCycDZEA561229:GJ85-4060-MONOMER.

Family and domain databases

HAMAPMF_00564. RNase_PH.
InterProIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR002381. RNase_PH_bac-type.
IPR018336. RNase_PH_CS.
[Graphical view]
PfamPF01138. RNase_PH. 1 hit.
PF03725. RNase_PH_C. 1 hit.
[Graphical view]
SUPFAMSSF55666. 3_ExoRNase. 1 hit.
SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMsTIGR01966. RNasePH. 1 hit.
PROSITEPS01277. RIBONUCLEASE_PH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6CP22_DICZE
AccessionPrimary (citable) accession number: C6CP22
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 1, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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