C6CJ71 (C6CJ71_DICZE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Ordered Locus Names:

Dd1591_0568

Organism

Dickeya zeae (strain Ech1591) [Complete proteome] [HAMAP] EMBL ACT05450.1

Taxonomic identifier

561229 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Dickeya › Dickeya zeae

Protein attributes

Sequence length	217 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C6CJ71 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 5AC50CC13568C1A1	FASTA	217	24,722
	10 20 30 40 50 60 MEPYNPPRDP WQHILYQDQH IMVVNKPSGL LSVPGRAEEH KDSIMTRIQA DFPAAESVHR 70 80 90 100 110 120 LDMATSGVMV VALTKAAERE LKRQFREREP KKSYIARVWG HLTQDDGLVD LPLICDWPNR 130 140 150 160 170 180 PKQKVCFEQG KPAQTNYTVL SRDNDGTTRV KLMPITGRSH QLRVHMLALG HPILGDGFYA 190 200 210 HPEAKALAPR LLLHAQELAI THPVFNTPMH FRCEADF

References

[1]

"Complete sequence of Dickeya zeae Ech1591." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Balakrishnan V., Glasner J., Perna N.T. Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Ech1591.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001655 Genomic DNA. Translation: ACT05450.1.
RefSeq	YP_003002929.1. NC_012912.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	561229.Dd1591_0568.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACT05450; ACT05450; Dd1591_0568.
GeneID	8119851.
KEGG	dze:Dd1591_0568.
PATRIC	21796988. VBIDicZea111179_0575.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0564.
HOGENOM	HOG000275919.
KO	K06177.
OMA	CQIVHRL.
ProtClustDB	CLSK928078.
Enzyme and pathway databases
BioCyc	DZEA561229:GJ85-587-MONOMER.
Family and domain databases
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C6CJ71_DICZE

Accession

Primary (citable) accession number: C6CJ71

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	May 1, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)