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Protein
Submitted name:

Rhamnogalacturonate lyase

Gene

Dd1591_2152

Organism
Dickeya zeae (strain Ech1591)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Enzyme and pathway databases

BioCyciDZEA561229:GJ85-2155-MONOMER.

Protein family/group databases

CAZyiPL4. Polysaccharide Lyase Family 4.

Names & Taxonomyi

Protein namesi
Submitted name:
Rhamnogalacturonate lyaseImported
Gene namesi
Ordered Locus Names:Dd1591_2152Imported
OrganismiDickeya zeae (strain Ech1591)Imported
Taxonomic identifieri561229 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesPectobacteriaceaeDickeya
Proteomesi
  • UP000002735 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi561229.Dd1591_2152.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini375 – 431fn3_3InterPro annotationAdd BLAST57
Domaini448 – 603CBM-likeInterPro annotationAdd BLAST156

Phylogenomic databases

eggNOGiENOG4108QEY. Bacteria.
ENOG410YE12. LUCA.
HOGENOMiHOG000142194.
OMAiGWISENP.
OrthoDBiPOG091H1HV2.

Family and domain databases

CDDicd10316. RGL4_M. 1 hit.
Gene3Di2.60.120.260. 1 hit.
2.60.40.1120. 1 hit.
2.70.98.10. 1 hit.
InterProiIPR014766. CarboxyPept_regulatory_dom.
IPR008979. Galactose-bd-like.
IPR014718. GH-type_carb-bd.
IPR029413. RG-lyase_II.
IPR029411. RG-lyase_III.
IPR010325. Rhamnogal_lyase.
[Graphical view]
PfamiPF14683. CBM-like. 1 hit.
PF14686. fn3_3. 1 hit.
PF06045. Rhamnogal_lyase. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6CIE9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSPFNEGKA GNHIQPVSSS WVRVVSMTWI KGKTYMQGRT YLIAVSLLCS
60 70 80 90 100
SLAQAASSSD VSMALSGMKA QIDNGLVSVA IGSDGSIGTL SNGSQNLIDK
110 120 130 140 150
ANSQVNALGK SSTGYLDYYS GSFLKFKPQQ ISVIENSKDI VHVAYIDNET
160 170 180 190 200
STLSLEYHFI VRRGVSGIYS YAVARNDTSS NLTVSELRGV YRFNPFLLDH
210 220 230 240 250
ISNGIRTTKP YLYSQLNNFE KIQDETWKLP DGSYYSKYDF AGYMRKTPVW
260 270 280 290 300
GVYGNNIGAW IIPGSTEYMS GDDTKQDLMV HQDGLAIMYM TGSHFGTPDL
310 320 330 340 350
IAPPGWQKLY GPWLLYVNAG SDDQMYRDAL TRSQQEIADW PYKWVNDSRF
360 370 380 390 400
PLDRTSVTGS INTTQPLNVT LSSSLNEASD VQTLGYAFTT NTDSQGNFRF
410 420 430 440 450
DKVRKGKYTL TVYANGGNRP GVLYSDVVNV TGATQIPAIQ LSEAAPVVWS
460 470 480 490 500
IGKSDRLASE FRFGDQLRNY HWQNDVPANL AYTVGQSSPA QDWYYAQTNP
510 520 530 540 550
GSWNVNYVDR ADGSGRVLNV AFAAASNRGM TNPTTPSLSV LVNGTKVKDI
560 570 580 590 600
QYDNDKALYR GAMNSGKYHY ERISIDSGLL RDGNNTITFT LNGGTFMYDA

VTLTK
Length:605
Mass (Da):66,732
Last modified:September 1, 2009 - v1
Checksum:i73230C85AF14B3AE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001655 Genomic DNA. Translation: ACT06995.1.

Genome annotation databases

EnsemblBacteriaiACT06995; ACT06995; Dd1591_2152.
KEGGidze:Dd1591_2152.
PATRICi21800308. VBIDicZea111179_2203.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001655 Genomic DNA. Translation: ACT06995.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi561229.Dd1591_2152.

Protein family/group databases

CAZyiPL4. Polysaccharide Lyase Family 4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACT06995; ACT06995; Dd1591_2152.
KEGGidze:Dd1591_2152.
PATRICi21800308. VBIDicZea111179_2203.

Phylogenomic databases

eggNOGiENOG4108QEY. Bacteria.
ENOG410YE12. LUCA.
HOGENOMiHOG000142194.
OMAiGWISENP.
OrthoDBiPOG091H1HV2.

Enzyme and pathway databases

BioCyciDZEA561229:GJ85-2155-MONOMER.

Family and domain databases

CDDicd10316. RGL4_M. 1 hit.
Gene3Di2.60.120.260. 1 hit.
2.60.40.1120. 1 hit.
2.70.98.10. 1 hit.
InterProiIPR014766. CarboxyPept_regulatory_dom.
IPR008979. Galactose-bd-like.
IPR014718. GH-type_carb-bd.
IPR029413. RG-lyase_II.
IPR029411. RG-lyase_III.
IPR010325. Rhamnogal_lyase.
[Graphical view]
PfamiPF14683. CBM-like. 1 hit.
PF14686. fn3_3. 1 hit.
PF06045. Rhamnogal_lyase. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiC6CIE9_DICZE
AccessioniPrimary (citable) accession number: C6CIE9
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: November 30, 2016
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.