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C6CHU4 (C6CHU4_DICZE) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Rhamnogalacturonate lyase EMBL ACT08051.1
Gene names
Ordered Locus Names:Dd1591_3231
OrganismDickeya zeae (strain Ech1591) [Complete proteome] [HAMAP] EMBL ACT08051.1
Taxonomic identifier561229 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Dickeya ›

Protein attributes

Sequence length580 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ACT08051.1
   Molecular functionLyase EMBL ACT08051.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncarbohydrate binding

Inferred from electronic annotation. Source: InterPro

lyase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2626 Potential EMBL ACT08051.1
Chain27 – 580554 Potential EMBL ACT08051.1
PRO_5000484033

Sequences

Sequence LengthMass (Da)Tools
C6CHU4 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: D5A7A0189308CE64

FASTA58065,220
        10         20         30         40         50         60 
MMKPLQAWRT PLLTLAFVLP LTATGAVQLT LDGMNSTLDN GLLKVRFGAD GSAKEVWKGG 

        70         80         90        100        110        120 
TNLISRLSGA ARDPDKNRSF YLDYYSGGVN EFVPERLNVI KQTPDMVHLA YIDDQNGKLR 

       130        140        150        160        170        180 
LEYHLIMTSG VSGLYSYVVA ANTGAAPVTI SELRNVYRFD ATRLDTLFNS IRRGTPLLYE 

       190        200        210        220        230        240 
ELEQLPKVQD ETWRLPDGNV YSKYDFAGYQ RESRYWGVMG NGYGAWMVPA SGEYFSGDAL 

       250        260        270        280        290        300 
KQELLVHQDA IILNYLTGSH FGTPDMVAQP GFEKLYGPWL LYINQGNDRE LVADVSRRAE 

       310        320        330        340        350        360 
HERASWPYRW LDDSRYPRAR ATVSGRLRTD APHATVVLNS SKEEFDVQTT GYLYTTRTHR 

       370        380        390        400        410        420 
DGRFNLDNVP PGEYRLSAYA DGGTQIGLLA QQTIQVDGKK TRLGQIDAQR PAPLVWAIGQ 

       430        440        450        460        470        480 
ADRRAEEFRF GDKLRQYHWQ TEVPANLTFD IGKSRERKDW YYAQTQPGSW HIQFTTRTPE 

       490        500        510        520        530        540 
QPYTLNIALA AASNSGMTTP ASSPQLAVKL NDQLLTTLKY DNDKAIYRGA MQSGRYHEAH 

       550        560        570        580 
IPLPAGILQP GSNRITLELQ GGMVMYDAIT LTETPSRTQP

« Hide

References

[1]"Complete sequence of Dickeya zeae Ech1591."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Balakrishnan V., Glasner J., Perna N.T.
Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Ech1591.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001655 Genomic DNA. Translation: ACT08051.1.
RefSeqYP_003005530.1. NC_012912.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING561229.Dd1591_3231.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACT08051; ACT08051; Dd1591_3231.
GeneID8120859.
KEGGdze:Dd1591_3231.
PATRIC21802533. VBIDicZea111179_3298.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG282477.
HOGENOMHOG000142194.
OMAVWAIGQA.
ProtClustDBCLSK2522675.

Enzyme and pathway databases

BioCycDZEA561229:GJ85-3302-MONOMER.

Family and domain databases

Gene3D2.60.40.1120. 1 hit.
InterProIPR013784. Carb-bd-like_fold.
IPR014766. CarboxyPept_regulatory_dom.
IPR011013. Gal_mutarotase_SF_dom.
IPR008979. Galactose-bd-like.
IPR010325. Rhamnogal_lyase.
[Graphical view]
PfamPF06045. Rhamnogal_lyase. 1 hit.
[Graphical view]
SUPFAMSSF49452. CBD_4. 1 hit.
SSF49785. Gal_bind_like. 1 hit.
SSF74650. Gal_mut_like. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC6CHU4_DICZE
AccessionPrimary (citable) accession number: C6CHU4
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 1, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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