C6CC22 (C6CC22_DICDC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Exodeoxyribonuclease V, beta subunit EMBL ACS86782.1
EC=3.1.11.5 EMBL ACS86782.1

Gene names

Ordered Locus Names:

Dd703_3007

Organism

Dickeya dadantii (strain Ech703) [Complete proteome] [HAMAP] EMBL ACS86782.1

Taxonomic identifier

579405 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Dickeya › Dickeya dadantii

Protein attributes

Sequence length	1189 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 uvrD-like helicase ATP-binding domain. SAAS SAAS000212 Contains 1 uvrD-like helicase C-terminal domain. SAAS SAAS000212

Ontologies

Keywords
Biological process	DNA damage DNA repair SAAS SAAS000212
Ligand	ATP-binding Nucleotide-binding
Molecular function	Exonuclease SAAS SAAS000212 Helicase SAAS SAAS000212 Hydrolase Nuclease
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA repair Inferred from electronic annotation. Source: UniProtKB-KW nucleic acid phosphodiester bond hydrolysis Inferred from electronic annotation. Source: GOC
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ATP-dependent DNA helicase activity Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro exodeoxyribonuclease V activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C6CC22 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 208F5E1F3C58387E	FASTA	1,189	134,528
	10 20 30 40 50 60 MNERRSESLN LLTLPLLGER LIEASAGTGK TYTLAGLYLR LLLGLGGENA YPRPLSVEEI 70 80 90 100 110 120 LVVTFTEAAT QELRDRIRDK IHSLYLACLR NESDEPLVKL LLAEIPDAFR AEAAQVLLRA 130 140 150 160 170 180 ERQMDEAAVH TIHGFCQRML ATNAFESGVL FEQRLVEDET PLYRQACADF WRRFCYPLPL 190 200 210 220 230 240 SVASELGREW AGPDALLQDL MPYLHGEMPL LRRPPDPDET LLARHQNIIA RLETFKAAWL 250 260 270 280 290 300 GVAKELEALI GSSGVDKRRY SSRYLPLWLS NVTAWAQQPT RNYQLPKELE RFGQRELNQR 310 320 330 340 350 360 TIKGEPPQHA IFLAVDDLLQ SSLTLRDLAI SLALSEVRLS IREEKQRRAE LGFDDLLSRL 370 380 390 400 410 420 DEALQQDAGQ ALAQAIRERY PLAMIDEFQD TDAQQYRIFS TIYADQPQCG WLMIGDPKQA 430 440 450 460 470 480 IYAFRGADIF TYMRAREDVP SHYTLDTNWR STPGMVEAVN RLFQCADTPF VFSQIPFLPV 490 500 510 520 530 540 NAADNNRSLT FEYQGSRMPA MRFWLTGREG VGVGDYQQAM ARQCADSICS WLSAGQRGEA 550 560 570 580 590 600 WLTRGEMRRP VVASDITVLV RSRYEAALIR QALGRLNIPS VYLSNRDSVF AASEATELLW 610 620 630 640 650 660 LLQAVLAPEQ ERLLRGAMAT SLMGMDAAAL DELCRNESQW DALVDEFAGY RHIWGQRGVL 670 680 690 700 710 720 PMLRRLMQQH RLAENLLASP EGERRLTDVL HIGELLQEAS AALDSEHALV RWLAQQIAQP 730 740 750 760 770 780 NSQSESQQLR LESDRHLVQI VTIHKSKGLE YALVWLPFIC NFRAQPQGIY HDRQTLLPTL 790 800 810 820 830 840 DLNGGEESRT LAEEERLAED LRLLYVALTR SIYHCAVGVA PLYLRSQKKE GNSDMHSSAL 850 860 870 880 890 900 GYLLQRGAAA PADVLVAALE AMAGDDIDIA DVVAEDGEPW RPALETAPLL QVRQNKRQLH 910 920 930 940 950 960 DRWRVTSYSG LQQHGASAIQ ELFPRLDLET KGEEAQAPDE AFTPHTFPRG AAPGTFLHSL 970 980 990 1000 1010 1020 FEQLEFTAAI DEPWLLEQLR QQGMAEEWQP VVKAWLATVL DTPLTPEHIR LSALESRFRQ 1030 1040 1050 1060 1070 1080 SELQFYLPIA SMLDAGKLDR LAKTHDPLSA DCPALDFQQV KGMLKGFIDL VFFWQGRYYL 1090 1100 1110 1120 1130 1140 LDYKSNWLGP DAGAYTQPAM HRAMAEHRYD LQYQLYSLAL HRYLRHRVPG YDYQRHFGGV 1150 1160 1170 1180 IYLFLRGISA AYPGHGVFFT KPAQLLVDGL DLLFQGDTTI MDDEGAGNA

References

[1]

"Complete sequence of Dickeya dadantii Ech703." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. , Balakrishnan V., Glasner J., Perna N.T. Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Ech703.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001654 Genomic DNA. Translation: ACS86782.1.
RefSeq	YP_002988604.1. NC_012880.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	579405.Dd703_3007.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACS86782; ACS86782; Dd703_3007.
GeneID	8089842.
KEGG	dda:Dd703_3007.
PATRIC	21793583. VBIDicDad95084_3194.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1074.
HOGENOM	HOG000258330.
KO	K03582.
OMA	CEQILVV.
ProtClustDB	PRK10876.
Enzyme and pathway databases
BioCyc	DDAD579405:GHJU-3068-MONOMER.
Family and domain databases
Gene3D	3.90.320.10. 1 hit.
InterPro	IPR014017. DNA_helicase_UvrD-like_C. IPR000212. DNA_helicase_UvrD/REP. IPR004586. ExoDNase_V_bsu. IPR011604. Exonuc_phg/RecB_C. IPR011335. Restrct_endonuc-II-like. IPR014016. UvrD-like_ATP-bd. [Graphical view]
PANTHER	PTHR11070. PTHR11070. 1 hit.
Pfam	PF00580. UvrD-helicase. 1 hit. PF13361. UvrD_C. 1 hit. [Graphical view]
SUPFAM	SSF52980. Restrict_endonuc_II-like_core. 1 hit.
TIGRFAMs	TIGR00609. recB. 1 hit.
PROSITE	PS51198. UVRD_HELICASE_ATP_BIND. 1 hit. PS51217. UVRD_HELICASE_CTER. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C6CC22_DICDC

Accession

Primary (citable) accession number: C6CC22

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	May 1, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)