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C6CBG9 (C6CBG9_DICDC) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Dd703_0947 EMBL ACS84754.1
OrganismDickeya dadantii (strain Ech703) [Complete proteome] [HAMAP] EMBL ACS84754.1
Taxonomic identifier579405 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeDickeya

Protein attributes

Sequence length417 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding2231Magnesium PDB 4IHC
Metal binding2491Magnesium PDB 4IHC
Metal binding2751Magnesium PDB 4IHC
Binding site441Chloride 1 PDB 4IHC
Binding site441Chloride 2 PDB 4IHC
Binding site641Chloride 3; via amide nitrogen PDB 4IHC
Binding site2291Chloride 4; via amide nitrogen PDB 4IHC

Sequences

Sequence LengthMass (Da)Tools
C6CBG9 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: 4FF2BB5D58CFEB69

FASTA41746,153
        10         20         30         40         50         60 
MSKLKITNVK TILTAPGGID LAVVKVETNE PGLYGLGCAT FTQRIFAVKS AIDEYMAPFL 

        70         80         90        100        110        120 
IGKDPTRIED IWQSAAVSGY WRNGPIMNNA LSGVDMALWD IKGKLAGMPV YELLGGKCRD 

       130        140        150        160        170        180 
GIPLYCHTDG GDEVEVEDNI RARMEEGYQY VRCQMGMYGG AGTDDLKLIA TQLARAKNIQ 

       190        200        210        220        230        240 
PKRSPRSKTP GIYFDPEAYA KSVPRLFEHL RNKLGFGIEF IHDVHERVTP VTAIQLAKTL 

       250        260        270        280        290        300 
EPYQLFYLED PVAPENIDWL RMLRQQSSTP ISMGELFVNI NEWKPLIDNK LIDYIRCHVS 

       310        320        330        340        350        360 
TIGGITPAKK LAVYSELNGV RTAWHGPGDI SPVGVCANMH LDMSSPNFGI QEYTPMNDAL 

       370        380        390        400        410 
REVFPGCPEI DQGYAYVNDK PGLGIDINET LAEKYPCDGG IPSWTMARTP DGTASRP 

« Hide

References

« Hide 'large scale' references
[1]"Complete sequence of Dickeya dadantii Ech703."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. expand/collapse author list , Balakrishnan V., Glasner J., Perna N.T.
Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Ech703 EMBL ACS84754.1.
[2]"Crystal structure of mannonate dehydratase Dd703_0947 from Dickeya dadantii Ech703."
Patskovsky Y., Toro R., Bhosle R., Hillerich B., Seidel R.D., Washington E., Scott Glenn A., Chowdhury S., Evans B., Hammonds J., Zencheck W.D., Imker H.J., Al Obaidi N.F., Stead M., Love J., Gerlt J.A., Almo S.C.
Submitted (DEC-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) IN COMPLEX WITH CHLORIDE AND MAGNESIUM.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001654 Genomic DNA. Translation: ACS84754.1.
RefSeqYP_002986576.1. NC_012880.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4IHCX-ray2.00A/B/C/D/E/F/G/H1-417[»]
ProteinModelPortalC6CBG9.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING579405.Dd703_0947.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACS84754; ACS84754; Dd703_0947.
GeneID8090089.
KEGGdda:Dd703_0947.
PATRIC21789142. VBIDicDad95084_1016.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG4948.
HOGENOMHOG000113758.
KOK08323.
OMAHELSEYL.
OrthoDBEOG6SBSZM.
ProtClustDBCLSK2490234.

Enzyme and pathway databases

BioCycDDAD579405:GHJU-966-MONOMER.

Family and domain databases

InterProIPR018110. Mandel_Rmase/mucon_lact_enz_CS.
IPR013342. Mandelate_racemase_C.
IPR013341. Mandelate_racemase_N.
IPR001354. MR_MLE.
[Graphical view]
PANTHERPTHR13794. PTHR13794. 1 hit.
PfamPF01188. MR_MLE. 1 hit.
PF02746. MR_MLE_N. 1 hit.
[Graphical view]
SMARTSM00922. MR_MLE. 1 hit.
[Graphical view]
PROSITEPS00908. MR_MLE_1. 1 hit.
PS00909. MR_MLE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6CBG9_DICDC
AccessionPrimary (citable) accession number: C6CBG9
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: February 19, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)