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Protein
Submitted name:

TRAP dicarboxylate transporter-DctP subunit

Gene

Desal_0342

Organism
Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  1. transport Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciDSAL526222:GHES-350-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
TRAP dicarboxylate transporter-DctP subunitImported
Gene namesi
Ordered Locus Names:Desal_0342Imported
OrganismiDesulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763)Imported
Taxonomic identifieri526222 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
ProteomesiUP000002601: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. outer membrane-bounded periplasmic space Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2727 PotentialImportedAdd
BLAST
Chaini28 – 333306 PotentialImportedPRO_5000482727Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi526222.Desal_0342.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4N6KX-ray1.20A1-333[»]
ProteinModelPortaliC6BWG5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG1638.
HOGENOMiHOG000294793.
OMAiMKIRTPG.
OrthoDBiEOG66MQM6.

Family and domain databases

InterProiIPR018389. Extracellular_bind_fam7.
[Graphical view]
PfamiPF03480. SBP_bac_7. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

C6BWG5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSFKKTFSVL CAGAVLILSM STICMADDYK LTLKLSHVFS PAEQLSKSMD
60 70 80 90 100
AVAESIYEKT DGAINIQTFP QAQLPAYKEG VEQVVRGAKF ISVEDPSFIG
110 120 130 140 150
DYVPDFKALY APMLYRSFDE YVNLTQSDLV KKMQAEAEKQ GIKILALDYI
160 170 180 190 200
YGFRNLITQK VIKTPADLKG MKIRTPGSKS YIDTLTAMGA VATPLPWGET
210 220 230 240 250
LSAVQQGVVD GLEGSEFTNI GTKVYEGPTK NVANTRHILG TCGVYISTKV
260 270 280 290 300
WNDIPAKYQK IIQDEFTNGA NHMVNLLKSQ HGGVVKELES YGVKFNEVDG
310 320 330
DAFRAALKPL YKEQKGMTPG IYQSIFKELD AMR
Length:333
Mass (Da):36,811
Last modified:September 1, 2009 - v1
Checksum:i36669B81E832A930
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001649 Genomic DNA. Translation: ACS78409.1.
RefSeqiWP_012765935.1. NC_012881.1.
YP_002989948.1. NC_012881.1.

Genome annotation databases

EnsemblBacteriaiACS78409; ACS78409; Desal_0342.
GeneIDi8094120.
KEGGidsa:Desal_0342.
PATRICi21756121. VBIDesSal121003_0339.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001649 Genomic DNA. Translation: ACS78409.1.
RefSeqiWP_012765935.1. NC_012881.1.
YP_002989948.1. NC_012881.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4N6KX-ray1.20A1-333[»]
ProteinModelPortaliC6BWG5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi526222.Desal_0342.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACS78409; ACS78409; Desal_0342.
GeneIDi8094120.
KEGGidsa:Desal_0342.
PATRICi21756121. VBIDesSal121003_0339.

Phylogenomic databases

eggNOGiCOG1638.
HOGENOMiHOG000294793.
OMAiMKIRTPG.
OrthoDBiEOG66MQM6.

Enzyme and pathway databases

BioCyciDSAL526222:GHES-350-MONOMER.

Family and domain databases

InterProiIPR018389. Extracellular_bind_fam7.
[Graphical view]
PfamiPF03480. SBP_bac_7. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763Imported.
  2. "Crystal structure of a TRAP periplasmic solute binding protein from Desulfovibrio salexigens DSM2638, Target EFI-510113 (Desal_0342), complex with diglycerolphosphate."
    Vetting M.W., Al Obaidi N.F., Morisco L.L., Wasserman S.R., Sojitra S., Stead M., Attonito J.D., Scott Glenn A., Chowdhury S., Evans B., Hillerich B., Love J., Seidel R.D., Imker H.J., Gerlt J.A., Almo S.C.
    Submitted (OCT-2013) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.20 ANGSTROMS).

Entry informationi

Entry nameiC6BWG5_DESAD
AccessioniPrimary (citable) accession number: C6BWG5
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: February 4, 2015
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.