C6BHE0 (C6BHE0_RALP1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alginate lyase EMBL ACS64514.1

Gene names

Ordered Locus Names:

Rpic12D_3248

Organism

Ralstonia pickettii (strain 12D) [Complete proteome] [HAMAP]

Taxonomic identifier

428406 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Ralstonia

Protein attributes

Sequence length	320 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ACS64514.1
Molecular function	Lyase EMBL ACS64514.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	alginic acid catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	periplasmic space Inferred from electronic annotation. Source: InterPro
Molecular function	poly(beta-D-mannuronate) lyase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 29	29	Potential EMBL ACS64514.1
	Chain	30 – 320	291	Potential EMBL ACS64514.1		PRO_5000481767

Sequences

	Sequence		Length	Mass (Da)
	C6BHE0 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 9404E7F8E5852E37	FASTA	320	35,713
	10 20 30 40 50 60 MRRAYVRTLL AFSLVVGAGF GLVHAARACE IPAPVQTIDP PGFYDAAAGY TRDVKPMRNF 70 80 90 100 110 120 IAQLNASADK GDWTCALSQL RTWADADALM GKISGYQGHY ERSWAGTDFA MVLLRMPSEI 130 140 150 160 170 180 RKRNQAQLDA ITPWLERIAI ATRNAEAINH LHNNLVYWAG LNLIAIGTAT DNSDLIDSGL 190 200 210 220 230 240 LRVREGIRDI GPDGALAREV KRGDRALHYH TFALIPLVFA AELVQRRHID LYRENNHAIG 250 260 270 280 290 300 RLANLVIDAV VDPASFEKIT PIKQALFPWT FQDELCWMEP YYVHARDPRL PALIAPRRPF 310 320 SEWRLGGNVT AAWGAELPGH

References

[1]

"Complete sequence chromosome 1 of Ralstonia pickettii 12D." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Meincke L., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N. , Ovchinnikova G., Marsh T., Richardson P. Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 12D.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001644 Genomic DNA. Translation: ACS64514.1.
RefSeq	YP_002983186.1. NC_012856.1.
3D structure databases
ProteinModelPortal	C6BHE0.
ModBase	Search...
Protein-protein interaction databases
STRING	C6BHE0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	8020932.
GenomeReviews	Gene locus Rpic12D_3248 in contig CP001644_GR.
KEGG	rpf:Rpic12D_3248.
PATRIC	20245583. VBIRalPic57998_3856.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	AAWSVMA.
ProtClustDB	PRK00325.
Family and domain databases
InterPro	IPR008397. Alginate_lyase_dom. IPR008929. Chondroitin_lyas. [Graphical view]
Gene3D	G3DSA:1.50.10.110. Alginate_lyase. 1 hit.
KO	K01729.
Pfam	PF05426. Alginate_lyase. 1 hit. [Graphical view]
SUPFAM	SSF48230. Chondroitin_lyas. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C6BHE0_RALP1

Accession

Primary (citable) accession number: C6BHE0

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	December 14, 2011
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)