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Protein
Submitted name:

DNA ligase D

Gene

Rleg_5341

Organism
Rhizobium leguminosarum bv. trifolii (strain WSM1325)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRLEG395491:GHX2-5402-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Rleg_5341Imported
Encoded oniPlasmid pR132501Imported
OrganismiRhizobium leguminosarum bv. trifolii (strain WSM1325)Imported
Taxonomic identifieri395491 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000002256 Componenti: Plasmid pR132501

Interactioni

Protein-protein interaction databases

STRINGi395491.Rleg_5341.

Structurei

3D structure databases

ProteinModelPortaliC6B636.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6B636-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASDKLSTYR SKRDFKKTDE PSGEKRLSRS NRRRFVIQKH DATRLHYDLR
60 70 80 90 100
LELDGVFKSW AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG
110 120 130 140 150
GTVMLWDRGY WEPEGKKSPE QALAKGDFKF TLEGKRLHGS FVLVRMRNDR
160 170 180 190 200
NGGNRTNWLL IKHHDEFSVE NKGEAVLEEN DTSVASGRTM EMIAGGKGRK
210 220 230 240 250
PRPFMIEGGD VQADAVWDSN HGLAAEERKD DTGGGRKSKP ATKVDLPDFI
260 270 280 290 300
APQLCRTLER PPAGTGWLHE IKFDGYRIQM RVLDGEATLK TRKGLDWTAK
310 320 330 340 350
YPEIAEAAST LPDAIIDGEI CALDDHGAPD FAALQAALSE GKTGELVYFA
360 370 380 390 400
FDLLYEGGED VRSLPLVERK ARLQSLLSDA GDDPRVRFVE HFDTGGDAVL
410 420 430 440 450
QSACKLSLEG IVSKEADAPY QSGRTESWAK SKCRSGHEVV IGAYAQTNGK
460 470 480 490 500
FRSLLVGVYH GDHFVYVGRV GTGYGAKKVE TLLPKLKALE TAKSPFTGIG
510 520 530 540 550
APKKEAEVIW LKPELVAEIE FAGWTADGIV RQAAFKGLRE DKPAIEVKAE
560 570 580 590 600
RPAKPAQTDV PQPTVEAKTR PVRKKGAKAE VMGVLISNPD KPLWPDANDG
610 620 630 640 650
KTVTKEDLAC YYEAVGSWLI EHIKGRPCSI IRTPDGIGGE QFFQRHAMPG
660 670 680 690 700
TSNLLELVKV FGDKKPYLQI DRIEGLAAVA QIGAVELHPW NCEPRQPEVP
710 720 730 740 750
GRLVFDLDPG PDVPFSAVVS AAREMRDRLD ALGMISFCKT TGGKGLHVVT
760 770 780 790 800
PLAINKRKPL SWAEAKGFAH DVCQQMARDN PELYLIKMTK SLRDGRIFLD
810 820 830 840 850
YLRNDRMATA VAPLSPRARP GATVSMPLTW TQVKSDLDPK RFTIRTVPTL
860 870 880
LSKSSAWEDY GDGKRPLEQA IKRLGKVSKV A
Length:881
Mass (Da):97,363
Last modified:September 1, 2009 - v1
Checksum:i9EBB0C9F594802DF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001623 Genomic DNA. Translation: ACS59544.1.
RefSeqiWP_012755642.1. NC_012848.1.
YP_002973505.1. NC_012848.1.

Genome annotation databases

EnsemblBacteriaiACS59544; ACS59544; Rleg_5341.
KEGGirlg:Rleg_5341.
PATRICi23107207. VBIRhiLeg48398_0694.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001623 Genomic DNA. Translation: ACS59544.1.
RefSeqiWP_012755642.1. NC_012848.1.
YP_002973505.1. NC_012848.1.

3D structure databases

ProteinModelPortaliC6B636.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi395491.Rleg_5341.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACS59544; ACS59544; Rleg_5341.
KEGGirlg:Rleg_5341.
PATRICi23107207. VBIRhiLeg48398_0694.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciRLEG395491:GHX2-5402-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers."
    Reeve W., O'Hara G., Chain P., Ardley J., Brau L., Nandesena K., Tiwari R., Copeland A., Nolan M., Han C., Brettin T., Land M., Ovchinikova G., Ivanova N., Mavromatis K., Markowitz V., Kyrpides N., Melino V.
    , Denton M., Yates R., Howieson J.
    Stand. Genomic Sci. 2:347-356(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WSM1325Imported.

Entry informationi

Entry nameiC6B636_RHILS
AccessioniPrimary (citable) accession number: C6B636
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: April 29, 2015
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.