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C6B636 (C6B636_RHILS) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length881 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACS59544.1
   Technical termComplete proteome
Plasmid EMBL ACS59544.1
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
C6B636 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: 9EBB0C9F594802DF

FASTA88197,363
        10         20         30         40         50         60 
MASDKLSTYR SKRDFKKTDE PSGEKRLSRS NRRRFVIQKH DATRLHYDLR LELDGVFKSW 

        70         80         90        100        110        120 
AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG GTVMLWDRGY WEPEGKKSPE 

       130        140        150        160        170        180 
QALAKGDFKF TLEGKRLHGS FVLVRMRNDR NGGNRTNWLL IKHHDEFSVE NKGEAVLEEN 

       190        200        210        220        230        240 
DTSVASGRTM EMIAGGKGRK PRPFMIEGGD VQADAVWDSN HGLAAEERKD DTGGGRKSKP 

       250        260        270        280        290        300 
ATKVDLPDFI APQLCRTLER PPAGTGWLHE IKFDGYRIQM RVLDGEATLK TRKGLDWTAK 

       310        320        330        340        350        360 
YPEIAEAAST LPDAIIDGEI CALDDHGAPD FAALQAALSE GKTGELVYFA FDLLYEGGED 

       370        380        390        400        410        420 
VRSLPLVERK ARLQSLLSDA GDDPRVRFVE HFDTGGDAVL QSACKLSLEG IVSKEADAPY 

       430        440        450        460        470        480 
QSGRTESWAK SKCRSGHEVV IGAYAQTNGK FRSLLVGVYH GDHFVYVGRV GTGYGAKKVE 

       490        500        510        520        530        540 
TLLPKLKALE TAKSPFTGIG APKKEAEVIW LKPELVAEIE FAGWTADGIV RQAAFKGLRE 

       550        560        570        580        590        600 
DKPAIEVKAE RPAKPAQTDV PQPTVEAKTR PVRKKGAKAE VMGVLISNPD KPLWPDANDG 

       610        620        630        640        650        660 
KTVTKEDLAC YYEAVGSWLI EHIKGRPCSI IRTPDGIGGE QFFQRHAMPG TSNLLELVKV 

       670        680        690        700        710        720 
FGDKKPYLQI DRIEGLAAVA QIGAVELHPW NCEPRQPEVP GRLVFDLDPG PDVPFSAVVS 

       730        740        750        760        770        780 
AAREMRDRLD ALGMISFCKT TGGKGLHVVT PLAINKRKPL SWAEAKGFAH DVCQQMARDN 

       790        800        810        820        830        840 
PELYLIKMTK SLRDGRIFLD YLRNDRMATA VAPLSPRARP GATVSMPLTW TQVKSDLDPK 

       850        860        870        880 
RFTIRTVPTL LSKSSAWEDY GDGKRPLEQA IKRLGKVSKV A 

« Hide

References

[1]"Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers."
Reeve W., O'Hara G., Chain P., Ardley J., Brau L., Nandesena K., Tiwari R., Copeland A., Nolan M., Han C., Brettin T., Land M., Ovchinikova G., Ivanova N., Mavromatis K., Markowitz V., Kyrpides N., Melino V. expand/collapse author list , Denton M., Yates R., Howieson J.
Stand. Genomic Sci. 2:347-356(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: WSM1325 EMBL ACS59544.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001623 Genomic DNA. Translation: ACS59544.1.
RefSeqYP_002973505.1. NC_012848.1.

3D structure databases

ProteinModelPortalC6B636.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING395491.Rleg_5341.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACS59544; ACS59544; Rleg_5341.
GeneID8007299.
KEGGrlg:Rleg_5341.
PATRIC23107207. VBIRhiLeg48398_0694.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALELHPWN.
OrthoDBEOG661H49.
ProtClustDBPRK05972.

Enzyme and pathway databases

BioCycRLEG395491:GHX2-5402-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6B636_RHILS
AccessionPrimary (citable) accession number: C6B636
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: April 16, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)