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C6B636

- C6B636_RHILS

UniProt

C6B636 - C6B636_RHILS

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Protein
Submitted name: DNA ligase D
Gene
Rleg_5341
Organism
Rhizobium leguminosarum bv. trifolii (strain WSM1325)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRLEG395491:GHX2-5402-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Rleg_5341Imported
Encoded oniPlasmid pR132501Imported
OrganismiRhizobium leguminosarum bv. trifolii (strain WSM1325)Imported
Taxonomic identifieri395491 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000002256: Plasmid pR132501

Interactioni

Protein-protein interaction databases

STRINGi395491.Rleg_5341.

Structurei

3D structure databases

ProteinModelPortaliC6B636.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiFASEPRE.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6B636-1 [UniParc]FASTAAdd to Basket

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MASDKLSTYR SKRDFKKTDE PSGEKRLSRS NRRRFVIQKH DATRLHYDLR    50
LELDGVFKSW AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG 100
GTVMLWDRGY WEPEGKKSPE QALAKGDFKF TLEGKRLHGS FVLVRMRNDR 150
NGGNRTNWLL IKHHDEFSVE NKGEAVLEEN DTSVASGRTM EMIAGGKGRK 200
PRPFMIEGGD VQADAVWDSN HGLAAEERKD DTGGGRKSKP ATKVDLPDFI 250
APQLCRTLER PPAGTGWLHE IKFDGYRIQM RVLDGEATLK TRKGLDWTAK 300
YPEIAEAAST LPDAIIDGEI CALDDHGAPD FAALQAALSE GKTGELVYFA 350
FDLLYEGGED VRSLPLVERK ARLQSLLSDA GDDPRVRFVE HFDTGGDAVL 400
QSACKLSLEG IVSKEADAPY QSGRTESWAK SKCRSGHEVV IGAYAQTNGK 450
FRSLLVGVYH GDHFVYVGRV GTGYGAKKVE TLLPKLKALE TAKSPFTGIG 500
APKKEAEVIW LKPELVAEIE FAGWTADGIV RQAAFKGLRE DKPAIEVKAE 550
RPAKPAQTDV PQPTVEAKTR PVRKKGAKAE VMGVLISNPD KPLWPDANDG 600
KTVTKEDLAC YYEAVGSWLI EHIKGRPCSI IRTPDGIGGE QFFQRHAMPG 650
TSNLLELVKV FGDKKPYLQI DRIEGLAAVA QIGAVELHPW NCEPRQPEVP 700
GRLVFDLDPG PDVPFSAVVS AAREMRDRLD ALGMISFCKT TGGKGLHVVT 750
PLAINKRKPL SWAEAKGFAH DVCQQMARDN PELYLIKMTK SLRDGRIFLD 800
YLRNDRMATA VAPLSPRARP GATVSMPLTW TQVKSDLDPK RFTIRTVPTL 850
LSKSSAWEDY GDGKRPLEQA IKRLGKVSKV A 881
Length:881
Mass (Da):97,363
Last modified:September 1, 2009 - v1
Checksum:i9EBB0C9F594802DF
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001623 Genomic DNA. Translation: ACS59544.1.
RefSeqiYP_002973505.1. NC_012848.1.

Genome annotation databases

EnsemblBacteriaiACS59544; ACS59544; Rleg_5341.
GeneIDi8007299.
KEGGirlg:Rleg_5341.
PATRICi23107207. VBIRhiLeg48398_0694.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001623 Genomic DNA. Translation: ACS59544.1 .
RefSeqi YP_002973505.1. NC_012848.1.

3D structure databases

ProteinModelPortali C6B636.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 395491.Rleg_5341.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACS59544 ; ACS59544 ; Rleg_5341 .
GeneIDi 8007299.
KEGGi rlg:Rleg_5341.
PATRICi 23107207. VBIRhiLeg48398_0694.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi FASEPRE.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci RLEG395491:GHX2-5402-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers."
    Reeve W., O'Hara G., Chain P., Ardley J., Brau L., Nandesena K., Tiwari R., Copeland A., Nolan M., Han C., Brettin T., Land M., Ovchinikova G., Ivanova N., Mavromatis K., Markowitz V., Kyrpides N., Melino V.
    , Denton M., Yates R., Howieson J.
    Stand. Genomic Sci. 2:347-356(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WSM1325Imported.
    Plasmid: pR132501

Entry informationi

Entry nameiC6B636_RHILS
AccessioniPrimary (citable) accession number: C6B636
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 14, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported

External Data

Dasty 3

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