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C6B636

- C6B636_RHILS

UniProt

C6B636 - C6B636_RHILS

Protein
Submitted name:

DNA ligase D

Gene

Rleg_5341

Organism
Rhizobium leguminosarum bv. trifolii (strain WSM1325)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 37 (01 Oct 2014)
      Sequence version 1 (01 Sep 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRLEG395491:GHX2-5402-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Rleg_5341Imported
    Encoded oniPlasmid pR132501Imported
    OrganismiRhizobium leguminosarum bv. trifolii (strain WSM1325)Imported
    Taxonomic identifieri395491 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
    ProteomesiUP000002256: Plasmid pR132501

    Interactioni

    Protein-protein interaction databases

    STRINGi395491.Rleg_5341.

    Structurei

    3D structure databases

    ProteinModelPortaliC6B636.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiFASEPRE.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C6B636-1 [UniParc]FASTAAdd to Basket

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    MASDKLSTYR SKRDFKKTDE PSGEKRLSRS NRRRFVIQKH DATRLHYDLR    50
    LELDGVFKSW AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG 100
    GTVMLWDRGY WEPEGKKSPE QALAKGDFKF TLEGKRLHGS FVLVRMRNDR 150
    NGGNRTNWLL IKHHDEFSVE NKGEAVLEEN DTSVASGRTM EMIAGGKGRK 200
    PRPFMIEGGD VQADAVWDSN HGLAAEERKD DTGGGRKSKP ATKVDLPDFI 250
    APQLCRTLER PPAGTGWLHE IKFDGYRIQM RVLDGEATLK TRKGLDWTAK 300
    YPEIAEAAST LPDAIIDGEI CALDDHGAPD FAALQAALSE GKTGELVYFA 350
    FDLLYEGGED VRSLPLVERK ARLQSLLSDA GDDPRVRFVE HFDTGGDAVL 400
    QSACKLSLEG IVSKEADAPY QSGRTESWAK SKCRSGHEVV IGAYAQTNGK 450
    FRSLLVGVYH GDHFVYVGRV GTGYGAKKVE TLLPKLKALE TAKSPFTGIG 500
    APKKEAEVIW LKPELVAEIE FAGWTADGIV RQAAFKGLRE DKPAIEVKAE 550
    RPAKPAQTDV PQPTVEAKTR PVRKKGAKAE VMGVLISNPD KPLWPDANDG 600
    KTVTKEDLAC YYEAVGSWLI EHIKGRPCSI IRTPDGIGGE QFFQRHAMPG 650
    TSNLLELVKV FGDKKPYLQI DRIEGLAAVA QIGAVELHPW NCEPRQPEVP 700
    GRLVFDLDPG PDVPFSAVVS AAREMRDRLD ALGMISFCKT TGGKGLHVVT 750
    PLAINKRKPL SWAEAKGFAH DVCQQMARDN PELYLIKMTK SLRDGRIFLD 800
    YLRNDRMATA VAPLSPRARP GATVSMPLTW TQVKSDLDPK RFTIRTVPTL 850
    LSKSSAWEDY GDGKRPLEQA IKRLGKVSKV A 881
    Length:881
    Mass (Da):97,363
    Last modified:September 1, 2009 - v1
    Checksum:i9EBB0C9F594802DF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001623 Genomic DNA. Translation: ACS59544.1.
    RefSeqiYP_002973505.1. NC_012848.1.

    Genome annotation databases

    EnsemblBacteriaiACS59544; ACS59544; Rleg_5341.
    GeneIDi8007299.
    KEGGirlg:Rleg_5341.
    PATRICi23107207. VBIRhiLeg48398_0694.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001623 Genomic DNA. Translation: ACS59544.1 .
    RefSeqi YP_002973505.1. NC_012848.1.

    3D structure databases

    ProteinModelPortali C6B636.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 395491.Rleg_5341.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACS59544 ; ACS59544 ; Rleg_5341 .
    GeneIDi 8007299.
    KEGGi rlg:Rleg_5341.
    PATRICi 23107207. VBIRhiLeg48398_0694.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi FASEPRE.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci RLEG395491:GHX2-5402-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers."
      Reeve W., O'Hara G., Chain P., Ardley J., Brau L., Nandesena K., Tiwari R., Copeland A., Nolan M., Han C., Brettin T., Land M., Ovchinikova G., Ivanova N., Mavromatis K., Markowitz V., Kyrpides N., Melino V.
      , Denton M., Yates R., Howieson J.
      Stand. Genomic Sci. 2:347-356(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: WSM1325Imported.

    Entry informationi

    Entry nameiC6B636_RHILS
    AccessioniPrimary (citable) accession number: C6B636
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 1, 2009
    Last sequence update: September 1, 2009
    Last modified: October 1, 2014
    This is version 37 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported, PlasmidImported

    External Data

    Dasty 3