C6B4J8 (C6B4J8_RHILS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
D-amino acid dehydrogenase small subunit HAMAP MF_01202
EC=1.4.99.1 HAMAP MF_01202

Gene names

Name:	dadA HAMAP MF_01202
Ordered Locus Names:	Rleg_4777

Encoded on

Plasmid pR132501 EMBL ACS59006.1

Organism

Rhizobium leguminosarum bv. trifolii (strain WSM1325) [Complete proteome] [HAMAP]

Taxonomic identifier

395491 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium

Protein attributes

Sequence length	416 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Oxidative deamination of D-amino acids By similarity. HAMAP MF_01202 SAAS SAAS023080
Catalytic activity	A D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor. HAMAP MF_01202 SAAS SAAS023080
Cofactor	FAD By similarity. HAMAP MF_01202 SAAS SAAS023080
Pathway	Amino-acid degradation; D-alanine degradation; NH(3) and pyruvate from D-alanine: step 1/1. HAMAP MF_01202
Subunit structure	Heterodimer of a small and a large subunit By similarity. HAMAP MF_01202 SAAS SAAS023080
Sequence similarities	Belongs to the DadA oxidoreductase family. HAMAP MF_01202

Ontologies

Keywords
Domain	Signal EMBL ACS59006.1
Ligand	FAD HAMAP MF_01202 SAAS SAAS023080 Flavoprotein HAMAP MF_01202 SAAS SAAS023080
Molecular function	Oxidoreductase HAMAP MF_01202 SAAS SAAS023080 EMBL ACS59006.1
Technical term	Complete proteome Plasmid EMBL ACS59006.1
Gene Ontology (GO)
Biological process	alanine catabolic process Inferred from electronic annotation. Source: HAMAP
Molecular function	D-amino-acid dehydrogenase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 21	21	Potential EMBL ACS59006.1
	Chain	22 – 416	395	Potential EMBL ACS59006.1		PRO_5000480912
Regions
	Nucleotide binding	3 – 17	15	FAD By similarity HAMAP MF_01202

Sequences

	Sequence		Length	Mass (Da)
	C6B4J8 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: D5DBD737117166A5	FASTA	416	44,914
	10 20 30 40 50 60 MKVIVLGAGI VGVTSAYQLA KAGHEVTVVD RQPGPALETS FANAGEVSFG YCSPWAAPGI 70 80 90 100 110 120 PMKAMKWLFM KHAPLVLRPK LDMAMLSWMA RMLSNCTSER YAINKSRMLR LADYSRIALA 130 140 150 160 170 180 DLRAETGIAY DERMQGTLQL FRTQQQLEAS AKDVKALAAD GIPYEVLDRD GCIRFEPALK 190 200 210 220 230 240 HVRDKIVGGL LTPKDETGDC FKFTNALAAK AEALGVRFVY GTTIKALDVE AGRVRGVITD 250 260 270 280 290 300 RERMIAEAVV VALGSYSPLL LKPLGIRLPV YPVKGYSLTI PITEASRAPE STVMDETYKI 310 320 330 340 350 360 AITRLGDRIR VGGMAEISGY TNDLGLARRS TLEHSVTDLF PGGDVSKASF WSGLRPMTPD 370 380 390 400 410 GTPVIGATKV AGLFLNTGHG TLGWTMSTGS ARLIGDLVSG GQPEIDVRDL AISRYG

References

[1]

"Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers." Reeve W., O'Hara G., Chain P., Ardley J., Brau L., Nandesena K., Tiwari R., Copeland A., Nolan M., Han C., Brettin T., Land M., Ovchinnikova G., Ivanova N., Mavromatis K., Markowitz V., Kyrpides N., Melino V. , Denton M., Yates R., Howieson J. Stand. Genomic Sci. 2:347-356(2010) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: WSM1325.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001623 Genomic DNA. Translation: ACS59006.1.
RefSeq	YP_002972967.1. NC_012848.1.
3D structure databases
ProteinModelPortal	C6B4J8.
ModBase	Search...
Protein-protein interaction databases
STRING	C6B4J8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	8007030.
GenomeReviews	Gene locus Rleg_4777 in contig CP001623_GR.
KEGG	rlg:Rleg_4777.
PATRIC	23106089. VBIRhiLeg48398_0135.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	LEHAGGQ.
ProtClustDB	PRK00711.
Family and domain databases
HAMAP	MF_01202. DadA. [Tree]
InterPro	IPR023080. D-aa_DH_ssu_DadA. IPR006076. FAD-dep_OxRdtase. [Graphical view]
KO	K00285.
Pfam	PF01266. DAO. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C6B4J8_RHILS

Accession

Primary (citable) accession number: C6B4J8

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	December 14, 2011
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)