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C6AWQ5 (C6AWQ5_RHILS) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length436 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylopyranose = D-xylulose. HAMAP-Rule MF_00455 RuleBase RU000609 SAAS SAAS001998

Cofactor

Binds 2 magnesium ions per subunit By similarity. HAMAP-Rule MF_00455

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00455 RuleBase RU000610 SAAS SAAS001998

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00455 RuleBase RU000610 SAAS SAAS001998.

Sequence similarities

Belongs to the xylose isomerase family. HAMAP-Rule MF_00455 RuleBase RU000609

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1001 By similarity HAMAP-Rule MF_00455
Active site1031 By similarity HAMAP-Rule MF_00455
Metal binding2311Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2671Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2671Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2701Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2951Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding3061Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3081Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3381Magnesium 1 By similarity HAMAP-Rule MF_00455

Sequences

Sequence LengthMass (Da)Tools
C6AWQ5 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: 5D13B29BCDDFF83A

FASTA43648,975
        10         20         30         40         50         60 
MSTGFFGDIQ KVKYEGPDST NPLAFRHYQP DEIVMGKRME DHLRFAVAYW HTFTWPGGDP 

        70         80         90        100        110        120 
FGGQTFLRPW FEDTMKAAKL KADVAFEFFS LLGSPYYCFH DADVRPEGKT FAENTKNLNE 

       130        140        150        160        170        180 
IVDYFAEKQA ATGTKLLWGT ANLFSHRRYM SGAATNPDPD VFAFAAATVK TCIDATQKLG 

       190        200        210        220        230        240 
GENYVLWGGR EGYETLLNTD IGRELDQLGR FLNLVVEYKH KIGYKGTILI EPKPQEPTKH 

       250        260        270        280        290        300 
QYDYDVATVY GFLKKHGLEN EVKLNIEQGH AILAGHSFEH ELALANALGI FGSIDMNRND 

       310        320        330        340        350        360 
YQSGWDTDQF PNNVPEMALA YYHVLAGGGF KTGGTNFDSK LRRQSLDPAD LLIGHIGGMD 

       370        380        390        400        410        420 
CCARGLKAAA KMIEDKALSQ PLADRYAGWE SAEAQKLFRG EYSLDEITHY VESHDVNPQP 

       430 
RSGKQELLEN VVNRYV 

« Hide

References

[1]"Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers."
Reeve W., O'Hara G., Chain P., Ardley J., Brau L., Nandesena K., Tiwari R., Copeland A., Nolan M., Han C., Brettin T., Land M., Ovchinikova G., Ivanova N., Mavromatis K., Markowitz V., Kyrpides N., Melino V. expand/collapse author list , Denton M., Yates R., Howieson J.
Stand. Genomic Sci. 2:347-356(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: WSM1325 EMBL ACS57952.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001622 Genomic DNA. Translation: ACS57952.1.
RefSeqYP_002977491.1. NC_012850.1.

3D structure databases

ProteinModelPortalC6AWQ5.
SMRC6AWQ5. Positions 4-436.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING395491.Rleg_3709.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACS57952; ACS57952; Rleg_3709.
GeneID8014547.
KEGGrlg:Rleg_3709.
PATRIC23114899. VBIRhiLeg48398_4495.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2115.
HOGENOMHOG000252293.
KOK01805.
OMALFHAHIG.
OrthoDBEOG62NX4R.

Enzyme and pathway databases

BioCycRLEG395491:GHX2-3751-MONOMER.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. SSF51658. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6AWQ5_RHILS
AccessionPrimary (citable) accession number: C6AWQ5
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: June 11, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)