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C6AWQ5

- C6AWQ5_RHILS

UniProt

C6AWQ5 - C6AWQ5_RHILS

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Protein

Xylose isomerase

Gene
xylA, Rleg_3709
Organism
Rhizobium leguminosarum bv. trifolii (strain WSM1325)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotations

Cofactori

Binds 2 magnesium ions per subunit By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei100 – 1001 By similarityUniRule annotation
Active sitei103 – 1031 By similarityUniRule annotation
Metal bindingi231 – 2311Magnesium 1 By similarityUniRule annotation
Metal bindingi267 – 2671Magnesium 1 By similarityUniRule annotation
Metal bindingi267 – 2671Magnesium 2 By similarityUniRule annotation
Metal bindingi270 – 2701Magnesium 2 By similarityUniRule annotation
Metal bindingi295 – 2951Magnesium 1 By similarityUniRule annotation
Metal bindingi306 – 3061Magnesium 2 By similarityUniRule annotation
Metal bindingi308 – 3081Magnesium 2 By similarityUniRule annotation
Metal bindingi338 – 3381Magnesium 1 By similarityUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. xylose isomerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-xylose metabolic process Source: UniProtKB-HAMAP
  2. pentose-phosphate shunt Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotationsImported

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotations, Xylose metabolismUniRule annotationSAAS annotations

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotations, Metal-bindingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciRLEG395491:GHX2-3751-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
Gene namesi
Name:xylAUniRule annotation
Ordered Locus Names:Rleg_3709Imported
OrganismiRhizobium leguminosarum bv. trifolii (strain WSM1325)Imported
Taxonomic identifieri395491 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000002256: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotationSAAS annotations

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotations

Interactioni

Subunit structurei

Homotetramer By similarity.UniRule annotationSAAS annotations

Protein-protein interaction databases

STRINGi395491.Rleg_3709.

Structurei

3D structure databases

ProteinModelPortaliC6AWQ5.
SMRiC6AWQ5. Positions 4-436.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG2115.
HOGENOMiHOG000252293.
KOiK01805.
OMAiLFHAHIG.
OrthoDBiEOG62NX4R.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6AWQ5-1 [UniParc]FASTAAdd to Basket

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MSTGFFGDIQ KVKYEGPDST NPLAFRHYQP DEIVMGKRME DHLRFAVAYW    50
HTFTWPGGDP FGGQTFLRPW FEDTMKAAKL KADVAFEFFS LLGSPYYCFH 100
DADVRPEGKT FAENTKNLNE IVDYFAEKQA ATGTKLLWGT ANLFSHRRYM 150
SGAATNPDPD VFAFAAATVK TCIDATQKLG GENYVLWGGR EGYETLLNTD 200
IGRELDQLGR FLNLVVEYKH KIGYKGTILI EPKPQEPTKH QYDYDVATVY 250
GFLKKHGLEN EVKLNIEQGH AILAGHSFEH ELALANALGI FGSIDMNRND 300
YQSGWDTDQF PNNVPEMALA YYHVLAGGGF KTGGTNFDSK LRRQSLDPAD 350
LLIGHIGGMD CCARGLKAAA KMIEDKALSQ PLADRYAGWE SAEAQKLFRG 400
EYSLDEITHY VESHDVNPQP RSGKQELLEN VVNRYV 436
Length:436
Mass (Da):48,975
Last modified:September 1, 2009 - v1
Checksum:i5D13B29BCDDFF83A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001622 Genomic DNA. Translation: ACS57952.1.
RefSeqiYP_002977491.1. NC_012850.1.

Genome annotation databases

EnsemblBacteriaiACS57952; ACS57952; Rleg_3709.
GeneIDi8014547.
KEGGirlg:Rleg_3709.
PATRICi23114899. VBIRhiLeg48398_4495.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001622 Genomic DNA. Translation: ACS57952.1 .
RefSeqi YP_002977491.1. NC_012850.1.

3D structure databases

ProteinModelPortali C6AWQ5.
SMRi C6AWQ5. Positions 4-436.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 395491.Rleg_3709.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACS57952 ; ACS57952 ; Rleg_3709 .
GeneIDi 8014547.
KEGGi rlg:Rleg_3709.
PATRICi 23114899. VBIRhiLeg48398_4495.

Phylogenomic databases

eggNOGi COG2115.
HOGENOMi HOG000252293.
KOi K01805.
OMAi LFHAHIG.
OrthoDBi EOG62NX4R.

Enzyme and pathway databases

BioCyci RLEG395491:GHX2-3751-MONOMER.

Family and domain databases

Gene3Di 3.20.20.150. 1 hit.
HAMAPi MF_00455. Xylose_isom_A.
InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view ]
Pfami PF01261. AP_endonuc_2. 1 hit.
[Graphical view ]
PRINTSi PR00688. XYLOSISMRASE.
SUPFAMi SSF51658. SSF51658. 1 hit.
TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers."
    Reeve W., O'Hara G., Chain P., Ardley J., Brau L., Nandesena K., Tiwari R., Copeland A., Nolan M., Han C., Brettin T., Land M., Ovchinikova G., Ivanova N., Mavromatis K., Markowitz V., Kyrpides N., Melino V.
    , Denton M., Yates R., Howieson J.
    Stand. Genomic Sci. 2:347-356(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WSM1325Imported.

Entry informationi

Entry nameiC6AWQ5_RHILS
AccessioniPrimary (citable) accession number: C6AWQ5
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: June 11, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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