Elongation factor Tu - Rhizobium leguminosarum bv. trifolii (strain WSM1325)

Contribute

Send feedback

Read comments (?) or add your own

C6AUY0 (C6AUY0_RHILS) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 34. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

text xml rdf/xml gff fasta

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Recommended name:
Elongation factor Tu HAMAP-Rule MF_00118
Short name=EF-Tu HAMAP-Rule MF_00118

Gene names

Name:	tuf HAMAP-Rule MF_00118
Ordered Locus Names:	Rleg_1413 EMBL ACS55705.1, Rleg_1428 EMBL ACS55720.1

Organism

Rhizobium leguminosarum bv. trifolii (strain WSM1325) [Complete proteome] [HAMAP] EMBL ACS55705.1

Taxonomic identifier

395491 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium ›

Protein attributes

Sequence length	391 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118
Subunit structure	Monomer By similarity. HAMAP-Rule MF_00118
Subcellular location	Cytoplasm By similarity HAMAP-Rule MF_00118.
Sequence similarities	Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Ontologies

Keywords
Biological process	Protein biosynthesis
Cellular component	Cytoplasm HAMAP-Rule MF_00118
Ligand	GTP-binding RuleBase RU000323 HAMAP-Rule MF_00118 Nucleotide-binding
Molecular function	Elongation factor RuleBase RU000325 HAMAP-Rule MF_00118 EMBL ACS55705.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	GTP catabolic process Inferred from electronic annotation. Source: GOC
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	GTP binding Inferred from electronic annotation. Source: HAMAP GTPase activity Inferred from electronic annotation. Source: InterPro translation elongation factor activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Regions

Nucleotide binding

19 – 26

GTP By similarity HAMAP-Rule MF_00118

Nucleotide binding

76 – 80

GTP By similarity HAMAP-Rule MF_00118

Nucleotide binding

131 – 134

GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence

Length

Mass (Da)

Tools

C6AUY0 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: B55D6BDE0D715A82
Show »

FASTA

391

42,596

        10         20         30         40         50         60 
MGKSKFERNK PHVNIGTIGH VDHGKTSLTA AITKYFGEYK AYDQIDAAPE EKARGITIST 

        70         80         90        100        110        120 
AHVEYETPAR HYAHVDCPGH ADYVKNMITG AAQMDGAILV CSAADGPMPQ TREHILLARQ 

       130        140        150        160        170        180 
VGVPAIVVFL NKVDQVDDAE LLELVELEVR ELLSSYDFPG DDIPIVKGSA LAALEDSDKK 

       190        200        210        220        230        240 
IGEDSIRELM AAVDAYIPTP ERPINLPFLL PIEDVFSISG RGTVVTGRVE RGIVKVGEEV 

       250        260        270        280        290        300 
EIVGIRPTTK TTVTGVEMFR KLLDQGQAGD NIGALIRGVT RDGVERGQIL CKPGSVKPHK 

       310        320        330        340        350        360 
KFMAEAYILT KEEGGRHTPF FTNYRPQFYF RTTDVTGIVT LPEGTEMVMP GDNVTVSVEL 

       370        380        390 
IVPIAMEEKL RFAIREGGRT VGAGIVASIV E

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete sequence of chromosome of Rhizobium leguminosarum bv. trifolii WSM1325." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova H., Reeve W.G. Submitted (MAY-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: WSM1325 EMBL ACS55705.1.
[2]	"Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers." Reeve W., O'Hara G., Chain P., Ardley J., Brau L., Nandesena K., Tiwari R., Copeland A., Nolan M., Han C., Brettin T., Land M., Ovchinikova G., Ivanova N., Mavromatis K., Markowitz V., Kyrpides N., Melino V. , Denton M., Yates R., Howieson J. Stand. Genomic Sci. 2:347-356(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: WSM1325 EMBL ACS55705.1.
[3]	"Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers." Reeve W., O'Hara G., Chain P., Ardley J., Brau L., Nandesena K., Tiwari R., Copeland A., Nolan M., Han C., Brettin T., Land M., Ovchinnikova G., Ivanova N., Mavromatis K., Markowitz V., Kyrpides N., Melino V. , Denton M., Yates R., Howieson J. Stand. Genomic Sci. 2:347-356(2010) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: WSM1325.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001622 Genomic DNA. Translation: ACS55705.1. CP001622 Genomic DNA. Translation: ACS55720.1.
RefSeq	YP_002975244.1. NC_012850.1. YP_002975259.1. NC_012850.1.
3D structure databases
SMR	C6AUY0. Positions 2-390.
ModBase	Search...
Protein-protein interaction databases
STRING	395491.Rleg_1428.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACS55705; ACS55705; Rleg_1413. ACS55720; ACS55720; Rleg_1428.
GeneID	8012506. 8012519.
KEGG	rlg:Rleg_1413. rlg:Rleg_1428.
PATRIC	23110228. VBIRhiLeg48398_2186.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0050.
HOGENOM	HOG000229290.
KO	K02358.
OMA	CEFVGYN.
ProtClustDB	PRK00049.
Enzyme and pathway databases
BioCyc	RLEG395491:GHX2-3252-MONOMER. RLEG395491:GHX2-3268-MONOMER.
Family and domain databases
HAMAP	MF_00118_B. EF_Tu_B.
InterPro	IPR000795. EF_GTP-bd_dom. IPR005225. Small_GTP-bd_dom. IPR009001. Transl_elong_EF1A/Init_IF2_C. IPR004161. Transl_elong_EFTu/EF1A_2. IPR004541. Transl_elong_EFTu/EF1A_bac/org. IPR004160. Transl_elong_EFTu/EF1A_C. IPR009000. Transl_elong_init/rib_B-barrel. [Graphical view]
Pfam	PF00009. GTP_EFTU. 1 hit. PF03144. GTP_EFTU_D2. 1 hit. PF03143. GTP_EFTU_D3. 1 hit. [Graphical view]
PRINTS	PR00315. ELONGATNFCT.
SUPFAM	SSF50465. Elong_init_C. 1 hit. SSF50447. Translat_factor. 1 hit.
TIGRFAMs	TIGR00485. EF-Tu. 1 hit. TIGR00231. small_GTP. 1 hit.
PROSITE	PS00301. EFACTOR_GTP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C6AUY0_RHILS

Accession

Primary (citable) accession number: C6AUY0

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	May 1, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Regions

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Enzyme and pathway databases

Family and domain databases

Entry information