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C6AS36 (C6AS36_RHILS) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length541 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
C6AS36 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: 43433418CA5D4ECB

FASTA54161,091
        10         20         30         40         50         60 
MKAFADLLDR LVLTPSRNGK LKLLTDYFRD TPDPDRGYGL AAIAGTLEVR NVKPAMLREL 

        70         80         90        100        110        120 
VLERMDEVLF RYSYDYVGDL AETISLVWDN ERDIDRSALA QPRLGEVVTG MNALGRTEVR 

       130        140        150        160        170        180 
SYVRDLLDRL DSSGRFAFIK LATGAMRIGV SARLAKQALA DLGDKDVAEI ETLWHGLQPP 

       190        200        210        220        230        240 
YETLFEWLAD GGEKPVLATP AIFHSVMLAN AVEEGDLTSL DPVNYAAEWK WDGIRVQLSR 

       250        260        270        280        290        300 
SGDRRKIYSR SGDDISGAFP DILDAINFSG VVDGELLVGG TARSNSPTRT FSDLQQRLNR 

       310        320        330        340        350        360 
KTVTAKMLGD YPAFIRTYDL LFDGDDDVRG RTYVDRRDRL TEIIDRAPHD RFDLSPLVPF 

       370        380        390        400        410        420 
SSWEELDTLR AAPPDPVIEG VMIKRRDSIY QAGRMKGPWF KWKRNPYNVD AVLMYAQRGH 

       430        440        450        460        470        480 
GKRSSYYSDF TFGVWADDED GEQLVPVGKA YFGFTDAELE VLDKFVRNNT TERFGPVRAV 

       490        500        510        520        530        540 
RADKDFGFVV EVAFEGINRS TRHKSGVAMR FPRIARLRPD KPSYEADRLR TLIAMIEAKP 


A 

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References

[1]"Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers."
Reeve W., O'Hara G., Chain P., Ardley J., Brau L., Nandesena K., Tiwari R., Copeland A., Nolan M., Han C., Brettin T., Land M., Ovchinikova G., Ivanova N., Mavromatis K., Markowitz V., Kyrpides N., Melino V. expand/collapse author list , Denton M., Yates R., Howieson J.
Stand. Genomic Sci. 2:347-356(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: WSM1325 EMBL ACS55211.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001622 Genomic DNA. Translation: ACS55211.1.
RefSeqYP_002974750.1. NC_012850.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING395491.Rleg_0915.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACS55211; ACS55211; Rleg_0915.
GeneID8012062.
KEGGrlg:Rleg_0915.
PATRIC23109192. VBIRhiLeg48398_1676.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036007.
KOK01971.
OMANRHKSGV.
OrthoDBEOG6Q8HXT.

Enzyme and pathway databases

BioCycRLEG395491:GHX2-923-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6AS36_RHILS
AccessionPrimary (citable) accession number: C6AS36
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 14, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)