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C6AQ70 (C6AQ70_AGGAN) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribonuclease PH HAMAP-Rule MF_00564

Short name=RNase PH HAMAP-Rule MF_00564
EC=2.7.7.56 HAMAP-Rule MF_00564
Alternative name(s):
tRNA nucleotidyltransferase HAMAP-Rule MF_00564
Gene names
Name:rph HAMAP-Rule MF_00564
Ordered Locus Names:NT05HA_1649 EMBL ACS97982.1
OrganismAggregatibacter aphrophilus (strain NJ8700) (Haemophilus aphrophilus) [Complete proteome] [HAMAP] EMBL ACS97982.1
Taxonomic identifier634176 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaeAggregatibacter

Protein attributes

Sequence length238 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. HAMAP-Rule MF_00564 SAAS SAAS002381

Catalytic activity

tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP-Rule MF_00564 SAAS SAAS002381

Sequence similarities

Belongs to the RNase PH family. HAMAP-Rule MF_00564

Sequences

Sequence LengthMass (Da)Tools
C6AQ70 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: 2E380F99D4585AA8

FASTA23825,661
        10         20         30         40         50         60 
MRPNQRANNQ TRPIKITRHY TKHAEGSVLV EFGDTKVLCT ATVEEGVPRF LKGLGQGWVT 

        70         80         90        100        110        120 
AEYGMLPRST HSRMQREAAK GKQGGRTLEI QRLIARSLRA MVDLEALGER CITLDCDVIQ 

       130        140        150        160        170        180 
ADGGTRTASI TGACVALCDA LNGLVANGTL SKNPLKGLVA AISVGIVDGE AVCDLEYVED 

       190        200        210        220        230 
SAAETDMNVV MMEDGRMIEV QGTAEGEPFS HEELLTLLDL AKQGCDIIFQ TQRAALAD 

« Hide

References

[1]"Complete genome sequence of Aggregatibacter (Haemophilus) aphrophilus NJ8700."
Di Bonaventura M.P., DeSalle R., Pop M., Nagarajan N., Figurski D.H., Fine D.H., Kaplan J.B., Planet P.J.
J. Bacteriol. 191:4693-4694(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NJ8700 EMBL ACS97982.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001607 Genomic DNA. Translation: ACS97982.1.
RefSeqYP_003008069.1. NC_012913.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING634176.NT05HA_1649.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACS97982; ACS97982; NT05HA_1649.
GeneID8123044.
KEGGaap:NT05HA_1649.
PATRIC31918312. VBIAggAph86045_1544.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0689.
HOGENOMHOG000229516.
KOK00989.
OMAKGQGWVT.
OrthoDBEOG6CZQQP.
ProtClustDBPRK00173.

Enzyme and pathway databases

BioCycAAPH634176:GHVL-1609-MONOMER.

Family and domain databases

Gene3D3.30.230.70. 1 hit.
HAMAPMF_00564. RNase_PH.
InterProIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR027408. PNPase/RNase_PH_dom.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR002381. RNase_PH_bac-type.
IPR018336. RNase_PH_CS.
[Graphical view]
PfamPF01138. RNase_PH. 1 hit.
PF03725. RNase_PH_C. 1 hit.
[Graphical view]
SUPFAMSSF54211. SSF54211. 1 hit.
SSF55666. SSF55666. 1 hit.
TIGRFAMsTIGR01966. RNasePH. 1 hit.
PROSITEPS01277. RIBONUCLEASE_PH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6AQ70_AGGAN
AccessionPrimary (citable) accession number: C6AQ70
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: April 16, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)