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Protein

tRNA pseudouridine synthase B

Gene

NJ8700_04575

Organism
Aggregatibacter aphrophilus (strain NJ8700) (Haemophilus aphrophilus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs.SAAS annotation

Catalytic activityi

tRNA uridine(55) = tRNA pseudouridine(55).SAAS annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

IsomeraseSAAS annotation

Keywords - Biological processi

tRNA processingSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA pseudouridine synthase BSAAS annotation
Gene namesi
ORF Names:NJ8700_04575Imported
OrganismiAggregatibacter aphrophilus (strain NJ8700) (Haemophilus aphrophilus)Imported
Taxonomic identifieri634176 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaeAggregatibacter

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini33 – 180148TruB_NInterPro annotationAdd
BLAST
Domaini246 – 30358TruB-C_2InterPro annotationAdd
BLAST

Phylogenomic databases

KOiK03177.

Family and domain databases

Gene3Di2.30.130.10. 1 hit.
HAMAPiMF_01080. TruB_bact.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR002501. PsdUridine_synth_N.
IPR015947. PUA-like_domain.
IPR014780. tRNA_psdUridine_synth_TruB.
IPR015240. tRNA_sdUridine_synth_fam1_C.
IPR032819. TruB_C.
[Graphical view]
PANTHERiPTHR13767. PTHR13767. 1 hit.
PfamiPF09157. TruB-C_2. 1 hit.
PF16198. TruB_C_2. 1 hit.
PF01509. TruB_N. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
SSF88697. SSF88697. 1 hit.
TIGRFAMsiTIGR00431. TruB. 1 hit.

Sequencei

Sequence statusi: Complete.

C6ANE3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKPRKRGRD IHGVFLLDKP QGMSSNDIMQ KVKRIFQANK AGHTGALDPL
60 70 80 90 100
ATGMLPICLG EATKFSQFLL DADKRYLVTA KLGERTDTSD AEGQIVETRE
110 120 130 140 150
VKVKTPEILT ALEQFRGDIL QVPTMFSALK HNGKPLYEYA RQGITVEREA
160 170 180 190 200
RPITIFELNF IEYNAPYLTL EVHCSKGTYI RTLVDDLGEV LGCGAHVTML
210 220 230 240 250
RRTAVADYPT EKMLDWNALQ SLAAQQDLAL LDALLLPMDT AVAKLPTLTL
260 270 280 290 300
DESQAQGIGF GQRVKFNNPN SLQGQVRLFS HENRFLGVAV IDENNVIRPQ

RLVVYE
Length:306
Mass (Da):34,171
Last modified:September 1, 2009 - v1
Checksum:iCEDA55C95C93A923
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP009230 Genomic DNA. Translation: AKS64700.1.
RefSeqiWP_005700692.1. NZ_CP009230.1.

Genome annotation databases

EnsemblBacteriaiACS97355; ACS97355; NT05HA_0980.
KEGGiaap:NT05HA_0980.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP009230 Genomic DNA. Translation: AKS64700.1.
RefSeqiWP_005700692.1. NZ_CP009230.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACS97355; ACS97355; NT05HA_0980.
KEGGiaap:NT05HA_0980.

Phylogenomic databases

KOiK03177.

Family and domain databases

Gene3Di2.30.130.10. 1 hit.
HAMAPiMF_01080. TruB_bact.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR002501. PsdUridine_synth_N.
IPR015947. PUA-like_domain.
IPR014780. tRNA_psdUridine_synth_TruB.
IPR015240. tRNA_sdUridine_synth_fam1_C.
IPR032819. TruB_C.
[Graphical view]
PANTHERiPTHR13767. PTHR13767. 1 hit.
PfamiPF09157. TruB-C_2. 1 hit.
PF16198. TruB_C_2. 1 hit.
PF01509. TruB_N. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
SSF88697. SSF88697. 1 hit.
TIGRFAMsiTIGR00431. TruB. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "DNA barcoding of Bradysia (Diptera: Sciaridae) for detection of the immature stages on agricultural crops."
    Shin S., Jung S., Heller K., Menzel F., Hong T.-K., Lee H., Lee S.
    Submitted (AUG-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NJ8700Imported.

Entry informationi

Entry nameiC6ANE3_AGGAN
AccessioniPrimary (citable) accession number: C6ANE3
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: January 20, 2016
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.