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C6A5R6 (C6A5R6_BIFLB) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
L-arabinose isomerase HAMAP MF_00519
EC=5.3.1.4 HAMAP MF_00519
Gene names
Name:araA HAMAP MF_00519
Ordered Locus Names:Balac_0068
OrganismBifidobacterium animalis subsp. lactis (strain Bl-04 / DGCC2908 / RB 4825 / SD5219) [Complete proteome] [HAMAP]
Taxonomic identifier580050 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium

Protein attributes

Sequence length505 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the conversion of L-arabinose to L-ribulose By similarity. HAMAP MF_00519 SAAS SAAS003762

Catalytic activity

L-arabinose = L-ribulose. HAMAP MF_00519 SAAS SAAS003762

Cofactor

Binds 1 manganese ion per subunit By similarity. HAMAP MF_00519 SAAS SAAS003762

Pathway

Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3. HAMAP MF_00519 SAAS SAAS003762

Sequence similarities

Belongs to the arabinose isomerase family. HAMAP MF_00519

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding3081Manganese By similarity HAMAP MF_00519
Metal binding3351Manganese By similarity HAMAP MF_00519
Metal binding3521Manganese By similarity HAMAP MF_00519
Metal binding4531Manganese By similarity HAMAP MF_00519

Sequences

Sequence LengthMass (Da)Tools
C6A5R6 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: EF64A716269F520D

FASTA50555,987
        10         20         30         40         50         60 
MAMENPFEGK EIWFGVGSQD LYGEEALRQV AQQSAEIVDS LNASGRIPVK LVLKPTLKSS 

        70         80         90        100        110        120 
DGVRRFMVDA SADDSCIGVI TWMHTFSPAK MWIRGLEALR KPLLQLNTQH HFEIPWETID 

       130        140        150        160        170        180 
MDFMNLNQAA HGDREYGYIV TRLGIPRKIV VGHYTDPAVA DKIGVWARAC AGWQASNTMN 

       190        200        210        220        230        240 
VMRWGDNMRN VAVTEGDKTE AERVFGASIN TWAVNELVAA YDAVKENQIK DLIEDYKAKY 

       250        260        270        280        290        300 
EIAPELLDKD YDSLFIAARE ECAMVNMMRA NGCTAGVDNF EDLGALPQLP GVGPQRFPSE 

       310        320        330        340        350        360 
YGWGFSAEGD WKTAVLVRIG AVMGYGLEGG ASLMEDYSYN FTPGNEMIMG SHMLEVSPSV 

       370        380        390        400        410        420 
GTIAKPRLEI HPLGIGGKAD PVRLVFTVAP KKDAVVVSLA DVRTRFRMLM NVVDVVEPLG 

       430        440        450        460        470        480 
SLDKLPCARA LWKPEPNLEI SAECWLRAGG SHHTCMTTSV GREAWEDFAR IAGVELAAID 

       490        500 
AETTPREFER ELEIEDVFHE LANRH

« Hide

References

[1]"Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04."
Barrangou R., Briczinski E.P., Traeger L.L., Loquasto J.R., Richards M., Horvath P., Coute-Monvoisin A.-C., Leyer G., Rendulic S., Steele J.L., Broadbent J.R., Oberg T., Dudley E.G., Schuster S., Romero D.A., Roberts R.F.
J. Bacteriol. 191:4144-4151(2009) [PubMed: 19376856] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001515 Genomic DNA. Translation: ACS45464.1.
RefSeqYP_002967526.1. NC_012814.1.

3D structure databases

ProteinModelPortalC6A5R6.
ModBaseSearch...

Protein-protein interaction databases

STRINGC6A5R6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8008057.
GenomeReviewsGene locus Balac_0068 in contig CP001515_GR.
KEGGblc:Balac_0068.
PATRIC21106285. VBIBifAni84420_0063.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMAEVCPTIA.
ProtClustDBPRK02929.

Family and domain databases

HAMAPMF_00519. Arabinose_Isome.
[Tree]
InterProIPR024664. Ara_Isoase_C.
IPR004216. Fuc/Ara_isomerase_C.
IPR009015. Fucose_isomerase_N/cen.
IPR003762. Lara_isomerase.
[Graphical view]
KOK01804.
PfamPF11762. Arabinose_Iso_C. 1 hit.
PF02610. Arabinose_Isome. 1 hit.
[Graphical view]
PIRSFPIRSF001478. L-ara_isomerase. 1 hit.
ProDomPD018364. Lara_isomerase. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50443. Fuc_isomerase_C. 1 hit.
SSF53743. Fuc_isomerase_N. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC6A5R6_BIFLB
AccessionPrimary (citable) accession number: C6A5R6
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: December 14, 2011
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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