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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

TSIB_1335

Organism
Thermococcus sibiricus (strain MM 739 / DSM 12597)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTSIB604354:GHMS-1351-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:TSIB_1335Imported
OrganismiThermococcus sibiricus (strain MM 739 / DSM 12597)Imported
Taxonomic identifieri604354 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus
Proteomesi
  • UP000009079 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi604354.TSIB_1335.

Structurei

3D structure databases

ProteinModelPortaliC6A442.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini86 – 240RNA_ligaseInterPro annotationAdd BLAST155

Phylogenomic databases

eggNOGiarCOG04218. Archaea.
COG1423. LUCA.
HOGENOMiHOG000224394.
KOiK07468.
OMAiICPFTTK.

Family and domain databases

CDDicd07894. Adenylation_RNA_ligase. 1 hit.
InterProiIPR021122. RNA_ligase_dom_REL/Rnl2.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF09414. RNA_ligase. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.

Sequencei

Sequence statusi: Complete.

C6A442-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVSSYFKSLL LDLGINKERI EILEGKGGIV EDEFEGIRYL RFKDSVANLR
60 70 80 90 100
RGTVLFDFHN IILGFPHIKR VVQLENGVKR VFKRKPFYVE EKVDGYNVRV
110 120 130 140 150
AQIEGRVFAF TRGGFICPFT TERIEDFVNM EFFKDYPNLV LCGEMAGPES
160 170 180 190 200
PYLVEGPPYV KEDIKFFLFD IQEKRTGKSL PVKERVKIAE EYGIPSVEIF
210 220 230 240 250
GIYDISKIND LRELIENLRE QRREGIVMKS FDMKRIIKYV TPYANINDIR
260 270 280 290 300
IGARVFFELP HGYFMQRIKR LGFYLSEKKI RDAEFEKYAT ALGKALLEPF
310 320 330 340 350
VESIWDVSGG EEIAEVFTVR VKHIETAYKM VSHFERLGLK IHIEEIEEMP
360 370 380
NDYWRISFKR VYPEATREIL ELWNGHAFVD
Length:380
Mass (Da):44,599
Last modified:September 1, 2009 - v1
Checksum:i3B863A170FADDCFD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001463 Genomic DNA. Translation: ACS90387.1.
RefSeqiWP_015849605.1. NC_012883.1.

Genome annotation databases

EnsemblBacteriaiACS90387; ACS90387; TSIB_1335.
GeneIDi8096336.
KEGGitsi:TSIB_1335.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001463 Genomic DNA. Translation: ACS90387.1.
RefSeqiWP_015849605.1. NC_012883.1.

3D structure databases

ProteinModelPortaliC6A442.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi604354.TSIB_1335.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACS90387; ACS90387; TSIB_1335.
GeneIDi8096336.
KEGGitsi:TSIB_1335.

Phylogenomic databases

eggNOGiarCOG04218. Archaea.
COG1423. LUCA.
HOGENOMiHOG000224394.
KOiK07468.
OMAiICPFTTK.

Enzyme and pathway databases

BioCyciTSIB604354:GHMS-1351-MONOMER.

Family and domain databases

CDDicd07894. Adenylation_RNA_ligase. 1 hit.
InterProiIPR021122. RNA_ligase_dom_REL/Rnl2.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF09414. RNA_ligase. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiC6A442_THESM
AccessioniPrimary (citable) accession number: C6A442
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: November 2, 2016
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.