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Protein

30S ribosomal protein S6e

Gene

rps6e

Organism
Thermococcus sibiricus (strain MM 739 / DSM 12597)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTSIB604354:GHMS-740-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S6eUniRule annotation
Gene namesi
Name:rps6eUniRule annotation
Ordered Locus Names:TSIB_0719
OrganismiThermococcus sibiricus (strain MM 739 / DSM 12597)
Taxonomic identifieri604354 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus
Proteomesi
  • UP000009079 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12612630S ribosomal protein S6ePRO_1000206627Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi604354.TSIB_0719.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S6e family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG01946. Archaea.
COG2125. LUCA.
HOGENOMiHOG000226356.
KOiK02991.
OMAiEQDANRF.

Family and domain databases

HAMAPiMF_00512. Ribosomal_S6e.
InterProiIPR001377. Ribosomal_S6e.
IPR020924. Ribosomal_S6e_arc.
IPR018282. Ribosomal_S6e_CS.
[Graphical view]
PANTHERiPTHR11502. PTHR11502. 1 hit.
PfamiPF01092. Ribosomal_S6e. 1 hit.
[Graphical view]
SMARTiSM01405. Ribosomal_S6e. 1 hit.
[Graphical view]
PROSITEiPS00578. RIBOSOMAL_S6E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6A2D7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATFKLVISD TKTGVAKQIE ITGAEADKLI GLRIGDEIEA KELGFNLSEI
60 70 80 90 100
FGSEIPGDVK LKITGGTDKD GFPMRPDVHG PRRVKILISR GPGFRPQERG
110 120
ERRKKTVRGN TISPEIAQIN VKIVYP
Length:126
Mass (Da):13,826
Last modified:September 1, 2009 - v1
Checksum:iE7B858748C9A276B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001463 Genomic DNA. Translation: ACS89782.1.
RefSeqiWP_015849002.1. NC_012883.1.

Genome annotation databases

EnsemblBacteriaiACS89782; ACS89782; TSIB_0719.
GeneIDi8095707.
KEGGitsi:TSIB_0719.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001463 Genomic DNA. Translation: ACS89782.1.
RefSeqiWP_015849002.1. NC_012883.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi604354.TSIB_0719.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACS89782; ACS89782; TSIB_0719.
GeneIDi8095707.
KEGGitsi:TSIB_0719.

Phylogenomic databases

eggNOGiarCOG01946. Archaea.
COG2125. LUCA.
HOGENOMiHOG000226356.
KOiK02991.
OMAiEQDANRF.

Enzyme and pathway databases

BioCyciTSIB604354:GHMS-740-MONOMER.

Family and domain databases

HAMAPiMF_00512. Ribosomal_S6e.
InterProiIPR001377. Ribosomal_S6e.
IPR020924. Ribosomal_S6e_arc.
IPR018282. Ribosomal_S6e_CS.
[Graphical view]
PANTHERiPTHR11502. PTHR11502. 1 hit.
PfamiPF01092. Ribosomal_S6e. 1 hit.
[Graphical view]
SMARTiSM01405. Ribosomal_S6e. 1 hit.
[Graphical view]
PROSITEiPS00578. RIBOSOMAL_S6E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Metabolic versatility and indigenous origin of the archaeon Thermococcus sibiricus, isolated from a siberian oil reservoir, as revealed by genome analysis."
    Mardanov A.V., Ravin N.V., Svetlitchnyi V.A., Beletsky A.V., Miroshnichenko M.L., Bonch-Osmolovskaya E.A., Skryabin K.G.
    Appl. Environ. Microbiol. 75:4580-4588(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MM 739 / DSM 12597.

Entry informationi

Entry nameiRS6E_THESM
AccessioniPrimary (citable) accession number: C6A2D7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: September 1, 2009
Last modified: May 11, 2016
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.