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C6A1R3

- C6A1R3_THESM

UniProt

C6A1R3 - C6A1R3_THESM

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Protein
Submitted name:

RNA-binding protein, containing S1 domain

Gene
TSIB_0492
Organism
Thermococcus sibiricus (strain MM 739 / DSM 12597)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. RNA binding Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciTSIB604354:GHMS-512-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
RNA-binding protein, containing S1 domainImported
Gene namesi
Ordered Locus Names:TSIB_0492Imported
OrganismiThermococcus sibiricus (strain MM 739 / DSM 12597)Imported
Taxonomic identifieri604354 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus
ProteomesiUP000009079: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. exosome (RNase complex) Source: InterPro
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi604354.TSIB_0492.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1096.
HOGENOMiHOG000222781.
KOiK07573.
OMAiCGNVETR.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019495. EXOSC1.
IPR025721. Exosome_cplx_N_dom.
IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. RNA-binding_domain_S1.
[Graphical view]
PfamiPF14382. ECR1_N. 1 hit.
PF10447. EXOSC1. 1 hit.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50126. S1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6A1R3-1 [UniParc]FASTAAdd to Basket

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MVEPKKKTVE NGELVLPGDY LGVIEEFLPG EGVIEENGEL YAARMGRVKI    50
DLEKIEISVE PVTDVPPLPQ VGDIVIARVL EVKSQAAIVE LLKIEGRKGY 100
REIATSKLAG IHVSQVKDGY VESMNSEFKI GDIVRAKVLT NNKSPIQLTT 150
REPDLGVIYA LCSSCKVSLV RKGNALVCPK CGRSESRKLS TYYRKLRLE 199
Length:199
Mass (Da):21,969
Last modified:September 1, 2009 - v1
Checksum:iC318B5D843342394
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001463 Genomic DNA. Translation: ACS89558.1.
RefSeqiWP_015848778.1. NC_012883.1.
YP_002993907.1. NC_012883.1.

Genome annotation databases

EnsemblBacteriaiACS89558; ACS89558; TSIB_0492.
GeneIDi8095479.
KEGGitsi:TSIB_0492.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001463 Genomic DNA. Translation: ACS89558.1 .
RefSeqi WP_015848778.1. NC_012883.1.
YP_002993907.1. NC_012883.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 604354.TSIB_0492.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACS89558 ; ACS89558 ; TSIB_0492 .
GeneIDi 8095479.
KEGGi tsi:TSIB_0492.

Phylogenomic databases

eggNOGi COG1096.
HOGENOMi HOG000222781.
KOi K07573.
OMAi CGNVETR.

Enzyme and pathway databases

BioCyci TSIB604354:GHMS-512-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR019495. EXOSC1.
IPR025721. Exosome_cplx_N_dom.
IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. RNA-binding_domain_S1.
[Graphical view ]
Pfami PF14382. ECR1_N. 1 hit.
PF10447. EXOSC1. 1 hit.
[Graphical view ]
SMARTi SM00316. S1. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS50126. S1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Metabolic versatility and indigenous origin of the archaeon Thermococcus sibiricus, isolated from a siberian oil reservoir, as revealed by genome analysis."
    Mardanov A.V., Ravin N.V., Svetlitchnyi V.A., Beletsky A.V., Miroshnichenko M.L., Bonch-Osmolovskaya E.A., Skryabin K.G.
    Appl. Environ. Microbiol. 75:4580-4588(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MM 739 / DSM 12597.

Entry informationi

Entry nameiC6A1R3_THESM
AccessioniPrimary (citable) accession number: C6A1R3
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: September 3, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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