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C6A1R3 (C6A1R3_THESM) Unreviewed, UniProtKB/TrEMBL

Last modified December 11, 2013. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:TSIB_0492 EMBL ACS89558.1
OrganismThermococcus sibiricus (strain MM 739 / DSM 12597) [Complete proteome] [HAMAP] EMBL ACS89558.1
Taxonomic identifier604354 [NCBI]
Taxonomic lineageArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus

Protein attributes

Sequence length199 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular_componentexosome (RNase complex)

Inferred from electronic annotation. Source: InterPro

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
C6A1R3 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: C318B5D843342394

FASTA19921,969
        10         20         30         40         50         60 
MVEPKKKTVE NGELVLPGDY LGVIEEFLPG EGVIEENGEL YAARMGRVKI DLEKIEISVE 

        70         80         90        100        110        120 
PVTDVPPLPQ VGDIVIARVL EVKSQAAIVE LLKIEGRKGY REIATSKLAG IHVSQVKDGY 

       130        140        150        160        170        180 
VESMNSEFKI GDIVRAKVLT NNKSPIQLTT REPDLGVIYA LCSSCKVSLV RKGNALVCPK 

       190 
CGRSESRKLS TYYRKLRLE 

« Hide

References

[1]"Metabolic versatility and indigenous origin of the archaeon Thermococcus sibiricus, isolated from a siberian oil reservoir, as revealed by genome analysis."
Mardanov A.V., Ravin N.V., Svetlitchnyi V.A., Beletsky A.V., Miroshnichenko M.L., Bonch-Osmolovskaya E.A., Skryabin K.G.
Appl. Environ. Microbiol. 75:4580-4588(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MM 739 / DSM 12597.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001463 Genomic DNA. Translation: ACS89558.1.
RefSeqYP_002993907.1. NC_012883.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING604354.TSIB_0492.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACS89558; ACS89558; TSIB_0492.
GeneID8095479.
KEGGtsi:TSIB_0492.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1096.
HOGENOMHOG000222781.
KOK07573.
OMACGNVETR.
ProtClustDBPRK09521.

Enzyme and pathway databases

BioCycTSIB604354:GHMS-512-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR019495. EXOSC1.
IPR025721. Exosome_cplx_N_dom.
IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. RNA-binding_domain_S1.
[Graphical view]
PfamPF14382. ECR1_N. 1 hit.
PF10447. EXOSC1. 1 hit.
[Graphical view]
SMARTSM00316. S1. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50126. S1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC6A1R3_THESM
AccessionPrimary (citable) accession number: C6A1R3
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: December 11, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)