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C6A1R3

- C6A1R3_THESM

UniProt

C6A1R3 - C6A1R3_THESM

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Protein
Submitted name:

RNA-binding protein, containing S1 domain

Gene

TSIB_0492

Organism
Thermococcus sibiricus (strain MM 739 / DSM 12597)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. RNA binding Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciTSIB604354:GHMS-512-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
RNA-binding protein, containing S1 domainImported
Gene namesi
Ordered Locus Names:TSIB_0492Imported
OrganismiThermococcus sibiricus (strain MM 739 / DSM 12597)Imported
Taxonomic identifieri604354 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus
ProteomesiUP000009079: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. exosome (RNase complex) Source: InterPro
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi604354.TSIB_0492.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1096.
HOGENOMiHOG000222781.
KOiK07573.
OMAiCGNVETR.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019495. EXOSC1.
IPR025721. Exosome_cplx_N_dom.
IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. S1_dom.
[Graphical view]
PfamiPF14382. ECR1_N. 1 hit.
PF10447. EXOSC1. 1 hit.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50126. S1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C6A1R3-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MVEPKKKTVE NGELVLPGDY LGVIEEFLPG EGVIEENGEL YAARMGRVKI
60 70 80 90 100
DLEKIEISVE PVTDVPPLPQ VGDIVIARVL EVKSQAAIVE LLKIEGRKGY
110 120 130 140 150
REIATSKLAG IHVSQVKDGY VESMNSEFKI GDIVRAKVLT NNKSPIQLTT
160 170 180 190
REPDLGVIYA LCSSCKVSLV RKGNALVCPK CGRSESRKLS TYYRKLRLE
Length:199
Mass (Da):21,969
Last modified:September 1, 2009 - v1
Checksum:iC318B5D843342394
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001463 Genomic DNA. Translation: ACS89558.1.
RefSeqiYP_002993907.1. NC_012883.1.

Genome annotation databases

EnsemblBacteriaiACS89558; ACS89558; TSIB_0492.
GeneIDi8095479.
KEGGitsi:TSIB_0492.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001463 Genomic DNA. Translation: ACS89558.1 .
RefSeqi YP_002993907.1. NC_012883.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 604354.TSIB_0492.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACS89558 ; ACS89558 ; TSIB_0492 .
GeneIDi 8095479.
KEGGi tsi:TSIB_0492.

Phylogenomic databases

eggNOGi COG1096.
HOGENOMi HOG000222781.
KOi K07573.
OMAi CGNVETR.

Enzyme and pathway databases

BioCyci TSIB604354:GHMS-512-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR019495. EXOSC1.
IPR025721. Exosome_cplx_N_dom.
IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. S1_dom.
[Graphical view ]
Pfami PF14382. ECR1_N. 1 hit.
PF10447. EXOSC1. 1 hit.
[Graphical view ]
SMARTi SM00316. S1. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS50126. S1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Metabolic versatility and indigenous origin of the archaeon Thermococcus sibiricus, isolated from a siberian oil reservoir, as revealed by genome analysis."
    Mardanov A.V., Ravin N.V., Svetlitchnyi V.A., Beletsky A.V., Miroshnichenko M.L., Bonch-Osmolovskaya E.A., Skryabin K.G.
    Appl. Environ. Microbiol. 75:4580-4588(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MM 739 / DSM 12597Imported.

Entry informationi

Entry nameiC6A1R3_THESM
AccessioniPrimary (citable) accession number: C6A1R3
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: October 29, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3