C5Z3B3 (C5Z3B3_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Arginine decarboxylase RuleBase RU003740
EC=4.1.1.19 RuleBase RU003740

Gene names

Name:	Sb10g002070 EMBL EER89125.1
ORF Names:	SORBIDRAFT_10g002070 EMBL EER89125.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare)

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	701 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-arginine = agmatine + CO2. RuleBase RU003740
Cofactor	Magnesium By similarity. RuleBase RU003740
Sequence similarities	Belongs to the Orn/Lys/Arg decarboxylase class-II family. RuleBase RU003737

Ontologies

Keywords
Biological process	Spermidine biosynthesis RuleBase RU003740
Molecular function	Decarboxylase RuleBase RU003740 Lyase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	arginine catabolic process Inferred from electronic annotation. Source: InterPro spermidine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	arginine decarboxylase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5Z3B3 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: D2472269650EC7E5	FASTA	701	74,283
	10 20 30 40 50 60 MPALAVDATT PVAHAIASCD AAARFPAPPV VGPAAAAAAD PVPWSADLSA ALYNVDGWGA 70 80 90 100 110 120 PYFFVNDDGD VAVRPHGPAT LPGQEIDLAK VVAKAAGPRE GGGLGLPLPL LVRFPDVLRH 130 140 150 160 170 180 RVETLNAAFG YAVRSTGYGS RYQGVYPVKC NQDRYVVEDI VEFGAPFGFG LEAGSKPELL 190 200 210 220 230 240 LAMSCLAARG NPDALLICNG YKDDGYVSLA LMARSMGLNT VIVLEQEEEL DIVVEASRRL 250 260 270 280 290 300 GVRPVVGMRA KLRTKHAGHF GSTSGEKGKF GLNAAQILSV VTKLKAIAML DCLQLLHFHI 310 320 330 340 350 360 GSQIPTTALL SDGVGEAAQI YCELARLGAD MRVIDVGGGL GIDYDGTHSA QTDMSVAYSL 370 380 390 400 410 420 EEYATAVVAA VGRVCDRKVV QHPIICSESG RALVSHHSVL VFEAFSATAP GRLDAATAYL 430 440 450 460 470 480 LDELTDDCRG DYRNVMAAAV RGDYDTCALY ADQLKRRSAE QFKEGVLGLE HLAAVDAFCE 490 500 510 520 530 540 LVARGMGAPE PPRTYHINLS VFTSLPDMWA IGQQFPIIPI QRLQERPAVD GVLSDLTCDS 550 560 570 580 590 600 DGKVSEFIGG RHSLPLHELP THATRGYYLG MFLGGAYQEA LGGLHNLFGG PSVVRVSQCD 610 620 630 640 650 660 GPHCFAVTRA AAGPSCADVL RAMQHEPEVM YEVLKQRTDG ATAAALARAF GAMPYLVFDP 670 680 690 700 EAAVLSSGES SGMSSDSEGS AAGAAEEEDD EEWEFMRGLT V

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed: 19189423] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000769 Genomic DNA. Translation: EER89125.1.
RefSeq	XP_002437758.1. XM_002437713.1.
UniGene	Sbi.10917.
3D structure databases
ProteinModelPortal	C5Z3B3.
ModBase	Search...
Protein-protein interaction databases
STRING	C5Z3B3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb10g002070.1; Sb10g002070.1; Sb10g002070.
GeneID	8068388.
KEGG	sbi:SORBI_10g002070.
Phylogenomic databases
GeneTree	EPGT00050000019086.
OMA	LICNGYK.
PhylomeDB	C5Z3B3.
ProtClustDB	PLN02439.
Family and domain databases
InterPro	IPR009006. Ala_racemase/Decarboxylase_C. IPR002985. Arg_decrbxlase. IPR022643. De-COase2_C. IPR022644. De-COase2_N. IPR022653. De-COase2_pyr-phos_BS. IPR000183. Orn/DAP/Arg_de-COase. [Graphical view]
Gene3D	G3DSA:2.40.37.10. Ala_racemase/Decarboxylase_C. 2 hits.
KO	K01583.
PANTHER	PTHR11482:SF3. Arg_decrbxlase. 1 hit.
Pfam	PF02784. Orn_Arg_deC_N. 1 hit. PF00278. Orn_DAP_Arg_deC. 1 hit. [Graphical view]
PIRSF	PIRSF001336. Arg_decrbxlase. 1 hit.
PRINTS	PR01180. ARGDCRBXLASE. PR01179. ODADCRBXLASE.
TIGRFAMs	TIGR01273. SpeA. 1 hit.
PROSITE	PS00878. ODR_DC_2_1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C5Z3B3_SORBI

Accession

Primary (citable) accession number: C5Z3B3

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	December 14, 2011
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)