C5Z044 (C5Z044_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein Sb09g003850 EMBL EES19029.1

Gene names

Name:	Sb09g003850 EMBL EES19029.1
ORF Names:	SORBIDRAFT_09g003850 EMBL EES19029.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare)

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	243 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. PIRSR PIRSR004848-1
Sequence similarities	Belongs to the UPF0001 family. RuleBase RU004514

Ontologies

Keywords
Ligand	Pyridoxal phosphate PIRSR PIRSR004848-1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Amino acid modifications
	Modified residue	42	1	N6-(pyridoxal phosphate)lysine By similarity PIRSR PIRSR004848-1

Sequences

	Sequence		Length	Mass (Da)
	C5Z044 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: C8DB06091106DD0E	FASTA	243	26,077
	10 20 30 40 50 60 MASVAAAEGA AAALRSVLSR AQQAAARAGR APGSVRVVAV SKTKPVPVIR GVYDAGHRCF 70 80 90 100 110 120 GENYVQELID KAPQLPEDIE WHFIGNLQSN KARALLAGVP NLDMVESVDD EKIASRLDRV 130 140 150 160 170 180 VADLGRKPLK VLVQVNTSGE ESKFGVDPSG CVELAKHVKL NCPNLVFSGL MTIGMLDYSS 190 200 210 220 230 240 TPENFKTLAN CREGVCKELG IPEEQCELSM GMSADFEQAI EMGSTNVRVG STIFGAREYP KKN

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed: 19189423] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000768 Genomic DNA. Translation: EES19029.1.
RefSeq	XP_002440599.1. XM_002440554.1.
UniGene	Sbi.3660.
3D structure databases
ProteinModelPortal	C5Z044.
ModBase	Search...
Protein-protein interaction databases
STRING	C5Z044.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb09g003850.1; Sb09g003850.1; Sb09g003850.
GeneID	8075982.
KEGG	sbi:SORBI_09g003850.
Phylogenomic databases
GeneTree	EPGT00050000006575.
OMA	AVSKTFE.
PhylomeDB	C5Z044.
ProtClustDB	CLSN2687775.
Family and domain databases
InterPro	IPR001608. Ala_racemase_N. IPR011078. UPF0001. [Graphical view]
KO	K06997.
PANTHER	PTHR10146. PP_YBL036C. 1 hit.
Pfam	PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PIRSF	PIRSF004848. YBL036c_PLPDEIII. 1 hit.
TIGRFAMs	TIGR00044. TIGR00044. 1 hit.
PROSITE	PS01211. UPF0001. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C5Z044_SORBI

Accession

Primary (citable) accession number: C5Z044

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	December 14, 2011
This is version 18 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)