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C5Z041

- C5Z041_SORBI

UniProt

C5Z041 - C5Z041_SORBI

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Protein
Submitted name: Putative uncharacterized protein Sb09g003820
Gene
Sb09g003820, SORBIDRAFT_09g003820
Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

GO - Biological processi

  1. SCF complex assembly Source: EnsemblPlants/Gramene
  2. embryo development ending in seed dormancy Source: EnsemblPlants/Gramene
  3. phloem or xylem histogenesis Source: EnsemblPlants/Gramene
  4. regulation of circadian rhythm Source: EnsemblPlants/Gramene
  5. response to auxin Source: EnsemblPlants/Gramene
  6. response to jasmonic acid Source: EnsemblPlants/Gramene
  7. ubiquitin-dependent protein catabolic process Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized protein Sb09g003820Imported
Gene namesi
Name:Sb09g003820Imported
ORF Names:SORBIDRAFT_09g003820Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
ProteomesiUP000000768: Chromosome 9

Organism-specific databases

GrameneiC5Z041.

Subcellular locationi

GO - Cellular componenti

  1. condensed nuclear chromosome Source: EnsemblPlants/Gramene
  2. cullin-RING ubiquitin ligase complex Source: InterPro
  3. cytosol Source: EnsemblPlants/Gramene
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb09g003820.1.

Family & Domainsi

Sequence similaritiesi

Belongs to the cullin family.UniRule annotation

Phylogenomic databases

eggNOGiCOG5647.
HOGENOMiHOG000176712.
KOiK03347.
OMAiYTTEWEN.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR016157. Cullin_CS.
IPR016158. Cullin_homology.
IPR001373. Cullin_N.
IPR019559. Cullin_neddylation_domain.
IPR016159. Cullin_repeat-like_dom.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00888. Cullin. 1 hit.
PF10557. Cullin_Nedd8. 1 hit.
[Graphical view]
SMARTiSM00182. CULLIN. 1 hit.
SM00884. Cullin_Nedd8. 1 hit.
[Graphical view]
SUPFAMiSSF74788. SSF74788. 1 hit.
SSF75632. SSF75632. 1 hit.
PROSITEiPS01256. CULLIN_1. 1 hit.
PS50069. CULLIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5Z041-1 [UniParc]FASTAAdd to Basket

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MAGQERRTID LEEGWAFMQK GITKLKNILE GKPEPQFSSE DYMMLYTTIY    50
NMCTQKPPHD YSQQLYDKYR ESFEEYITSM VLPSLREKHD EFMLRELVQR 100
WSNHKVMVRW LSRFFHYLDR YFISRRSLTP LKEVGLTCFR ELIYQEIKGQ 150
VKDAVIALID KEREGEQIDR ALLKNVLDIF VEIGLGQMEC YENDFEDFLL 200
KDTTEYYSVK AQSWILEDSC PDYMIKAEEC LKREKERVGH YLHISSEQKL 250
LEKVQNELLA QYATPLLEKE HSGCSALLRD DKVEDLSRMY RLFSKITRGL 300
EPISNMFKTH VTNEGTALVK QAEDSASNKK PEKKDMVGMQ EQVFVWKIIE 350
LHDKYVAYVT ECFQGHTLFH KALKEAFEVF CNKGVSGSSS AELLATFCDN 400
ILKKGCSEKL SDEAIEDALE KVVRLLAYIS DKDLFAEFYR KKLARRLLFD 450
KSANDEHERS ILTKLKQQCG GQFTSKMEGM VTDLTVARDH QTKFEEFVAG 500
HPELNPGIDL AVTVLTTGFW PSYKTFDINL PAEMVKCVEV FKEFYQTRTK 550
HRKLTWIYSL GTCNINAKFD AKPIELIVTT YQAALLLLFN GSDRLSYSEI 600
VTQLNLSDDD VVRLLHSLSC AKYKILTKEP ANRSISPNDV FEFNSKFTDR 650
MRRIKIPLPP VDEKKKVVED VDKDRRYAID ASIVRIMKSR KVMGHQQLVA 700
ECVEQLSRMF KPDFKAIKKR IEDLITRDYL ERDKDNANMY KYLA 744
Length:744
Mass (Da):86,831
Last modified:September 1, 2009 - v1
Checksum:i3CC378E58BE93330
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000768 Genomic DNA. Translation: EES19028.1.
RefSeqiXP_002440598.1. XM_002440553.1.
UniGeneiSbi.17936.

Genome annotation databases

EnsemblPlantsiSb09g003820.1; Sb09g003820.1; Sb09g003820.
GeneIDi8075980.
KEGGisbi:SORBI_09g003820.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000768 Genomic DNA. Translation: EES19028.1 .
RefSeqi XP_002440598.1. XM_002440553.1.
UniGenei Sbi.17936.

3D structure databases

ModBasei Search...

Protein-protein interaction databases

STRINGi 4558.Sb09g003820.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi Sb09g003820.1 ; Sb09g003820.1 ; Sb09g003820 .
GeneIDi 8075980.
KEGGi sbi:SORBI_09g003820.

Organism-specific databases

Gramenei C5Z041.

Phylogenomic databases

eggNOGi COG5647.
HOGENOMi HOG000176712.
KOi K03347.
OMAi YTTEWEN.

Family and domain databases

Gene3Di 1.10.10.10. 2 hits.
InterProi IPR016157. Cullin_CS.
IPR016158. Cullin_homology.
IPR001373. Cullin_N.
IPR019559. Cullin_neddylation_domain.
IPR016159. Cullin_repeat-like_dom.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF00888. Cullin. 1 hit.
PF10557. Cullin_Nedd8. 1 hit.
[Graphical view ]
SMARTi SM00182. CULLIN. 1 hit.
SM00884. Cullin_Nedd8. 1 hit.
[Graphical view ]
SUPFAMi SSF74788. SSF74788. 1 hit.
SSF75632. SSF75632. 1 hit.
PROSITEi PS01256. CULLIN_1. 1 hit.
PS50069. CULLIN_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. BTx623.

Entry informationi

Entry nameiC5Z041_SORBI
AccessioniPrimary (citable) accession number: C5Z041
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 14, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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