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C5Z041

- C5Z041_SORBI

UniProt

C5Z041 - C5Z041_SORBI

Protein
Submitted name:

Putative uncharacterized protein Sb09g003820

Gene

Sb09g003820

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 35 (01 Oct 2014)
      Sequence version 1 (01 Sep 2009)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. embryo development ending in seed dormancy Source: EnsemblPlants/Gramene
    2. phloem or xylem histogenesis Source: EnsemblPlants/Gramene
    3. regulation of circadian rhythm Source: EnsemblPlants/Gramene
    4. response to auxin Source: EnsemblPlants/Gramene
    5. response to jasmonic acid Source: EnsemblPlants/Gramene
    6. SCF complex assembly Source: EnsemblPlants/Gramene
    7. ubiquitin-dependent protein catabolic process Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative uncharacterized protein Sb09g003820Imported
    Gene namesi
    Name:Sb09g003820Imported
    ORF Names:SORBIDRAFT_09g003820Imported
    OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
    Taxonomic identifieri4558 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
    ProteomesiUP000000768: Chromosome 9

    Organism-specific databases

    GrameneiC5Z041.

    Subcellular locationi

    GO - Cellular componenti

    1. condensed nuclear chromosome Source: EnsemblPlants/Gramene
    2. cullin-RING ubiquitin ligase complex Source: InterPro
    3. cytosol Source: EnsemblPlants/Gramene

    Interactioni

    Protein-protein interaction databases

    STRINGi4558.Sb09g003820.1.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the cullin family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG5647.
    HOGENOMiHOG000176712.
    KOiK03347.
    OMAiYTTEWEN.

    Family and domain databases

    Gene3Di1.10.10.10. 2 hits.
    InterProiIPR016157. Cullin_CS.
    IPR016158. Cullin_homology.
    IPR001373. Cullin_N.
    IPR019559. Cullin_neddylation_domain.
    IPR016159. Cullin_repeat-like_dom.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF00888. Cullin. 1 hit.
    PF10557. Cullin_Nedd8. 1 hit.
    [Graphical view]
    SMARTiSM00182. CULLIN. 1 hit.
    SM00884. Cullin_Nedd8. 1 hit.
    [Graphical view]
    SUPFAMiSSF74788. SSF74788. 1 hit.
    SSF75632. SSF75632. 1 hit.
    PROSITEiPS01256. CULLIN_1. 1 hit.
    PS50069. CULLIN_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C5Z041-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAGQERRTID LEEGWAFMQK GITKLKNILE GKPEPQFSSE DYMMLYTTIY    50
    NMCTQKPPHD YSQQLYDKYR ESFEEYITSM VLPSLREKHD EFMLRELVQR 100
    WSNHKVMVRW LSRFFHYLDR YFISRRSLTP LKEVGLTCFR ELIYQEIKGQ 150
    VKDAVIALID KEREGEQIDR ALLKNVLDIF VEIGLGQMEC YENDFEDFLL 200
    KDTTEYYSVK AQSWILEDSC PDYMIKAEEC LKREKERVGH YLHISSEQKL 250
    LEKVQNELLA QYATPLLEKE HSGCSALLRD DKVEDLSRMY RLFSKITRGL 300
    EPISNMFKTH VTNEGTALVK QAEDSASNKK PEKKDMVGMQ EQVFVWKIIE 350
    LHDKYVAYVT ECFQGHTLFH KALKEAFEVF CNKGVSGSSS AELLATFCDN 400
    ILKKGCSEKL SDEAIEDALE KVVRLLAYIS DKDLFAEFYR KKLARRLLFD 450
    KSANDEHERS ILTKLKQQCG GQFTSKMEGM VTDLTVARDH QTKFEEFVAG 500
    HPELNPGIDL AVTVLTTGFW PSYKTFDINL PAEMVKCVEV FKEFYQTRTK 550
    HRKLTWIYSL GTCNINAKFD AKPIELIVTT YQAALLLLFN GSDRLSYSEI 600
    VTQLNLSDDD VVRLLHSLSC AKYKILTKEP ANRSISPNDV FEFNSKFTDR 650
    MRRIKIPLPP VDEKKKVVED VDKDRRYAID ASIVRIMKSR KVMGHQQLVA 700
    ECVEQLSRMF KPDFKAIKKR IEDLITRDYL ERDKDNANMY KYLA 744
    Length:744
    Mass (Da):86,831
    Last modified:September 1, 2009 - v1
    Checksum:i3CC378E58BE93330
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000768 Genomic DNA. Translation: EES19028.1.
    RefSeqiXP_002440598.1. XM_002440553.1.
    UniGeneiSbi.17936.

    Genome annotation databases

    EnsemblPlantsiSb09g003820.1; Sb09g003820.1; Sb09g003820.
    GeneIDi8075980.
    KEGGisbi:SORBI_09g003820.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000768 Genomic DNA. Translation: EES19028.1 .
    RefSeqi XP_002440598.1. XM_002440553.1.
    UniGenei Sbi.17936.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 4558.Sb09g003820.1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi Sb09g003820.1 ; Sb09g003820.1 ; Sb09g003820 .
    GeneIDi 8075980.
    KEGGi sbi:SORBI_09g003820.

    Organism-specific databases

    Gramenei C5Z041.

    Phylogenomic databases

    eggNOGi COG5647.
    HOGENOMi HOG000176712.
    KOi K03347.
    OMAi YTTEWEN.

    Family and domain databases

    Gene3Di 1.10.10.10. 2 hits.
    InterProi IPR016157. Cullin_CS.
    IPR016158. Cullin_homology.
    IPR001373. Cullin_N.
    IPR019559. Cullin_neddylation_domain.
    IPR016159. Cullin_repeat-like_dom.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF00888. Cullin. 1 hit.
    PF10557. Cullin_Nedd8. 1 hit.
    [Graphical view ]
    SMARTi SM00182. CULLIN. 1 hit.
    SM00884. Cullin_Nedd8. 1 hit.
    [Graphical view ]
    SUPFAMi SSF74788. SSF74788. 1 hit.
    SSF75632. SSF75632. 1 hit.
    PROSITEi PS01256. CULLIN_1. 1 hit.
    PS50069. CULLIN_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. BTx623Imported.

    Entry informationi

    Entry nameiC5Z041_SORBI
    AccessioniPrimary (citable) accession number: C5Z041
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 1, 2009
    Last sequence update: September 1, 2009
    Last modified: October 1, 2014
    This is version 35 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3