C5Z041 (C5Z041_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein Sb09g003820 EMBL EES19028.1

Gene names

Name:	Sb09g003820 EMBL EES19028.1
ORF Names:	SORBIDRAFT_09g003820 EMBL EES19028.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	744 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the cullin family. RuleBase RU003829

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	SCF complex assembly Inferred from electronic annotation. Source: EnsemblPlants/Gramene embryo development ending in seed dormancy Inferred from electronic annotation. Source: EnsemblPlants/Gramene regulation of circadian rhythm Inferred from electronic annotation. Source: EnsemblPlants/Gramene response to auxin stimulus Inferred from electronic annotation. Source: EnsemblPlants/Gramene response to jasmonic acid stimulus Inferred from electronic annotation. Source: EnsemblPlants/Gramene ubiquitin-dependent protein catabolic process Inferred from electronic annotation. Source: InterPro
Cellular_component	chloroplast envelope Inferred from electronic annotation. Source: EnsemblPlants/Gramene condensed nuclear chromosome Inferred from electronic annotation. Source: EnsemblPlants/Gramene cullin-RING ubiquitin ligase complex Inferred from electronic annotation. Source: InterPro phragmoplast Inferred from electronic annotation. Source: EnsemblPlants/Gramene spindle Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5Z041 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 3CC378E58BE93330	FASTA	744	86,831
	10 20 30 40 50 60 MAGQERRTID LEEGWAFMQK GITKLKNILE GKPEPQFSSE DYMMLYTTIY NMCTQKPPHD 70 80 90 100 110 120 YSQQLYDKYR ESFEEYITSM VLPSLREKHD EFMLRELVQR WSNHKVMVRW LSRFFHYLDR 130 140 150 160 170 180 YFISRRSLTP LKEVGLTCFR ELIYQEIKGQ VKDAVIALID KEREGEQIDR ALLKNVLDIF 190 200 210 220 230 240 VEIGLGQMEC YENDFEDFLL KDTTEYYSVK AQSWILEDSC PDYMIKAEEC LKREKERVGH 250 260 270 280 290 300 YLHISSEQKL LEKVQNELLA QYATPLLEKE HSGCSALLRD DKVEDLSRMY RLFSKITRGL 310 320 330 340 350 360 EPISNMFKTH VTNEGTALVK QAEDSASNKK PEKKDMVGMQ EQVFVWKIIE LHDKYVAYVT 370 380 390 400 410 420 ECFQGHTLFH KALKEAFEVF CNKGVSGSSS AELLATFCDN ILKKGCSEKL SDEAIEDALE 430 440 450 460 470 480 KVVRLLAYIS DKDLFAEFYR KKLARRLLFD KSANDEHERS ILTKLKQQCG GQFTSKMEGM 490 500 510 520 530 540 VTDLTVARDH QTKFEEFVAG HPELNPGIDL AVTVLTTGFW PSYKTFDINL PAEMVKCVEV 550 560 570 580 590 600 FKEFYQTRTK HRKLTWIYSL GTCNINAKFD AKPIELIVTT YQAALLLLFN GSDRLSYSEI 610 620 630 640 650 660 VTQLNLSDDD VVRLLHSLSC AKYKILTKEP ANRSISPNDV FEFNSKFTDR MRRIKIPLPP 670 680 690 700 710 720 VDEKKKVVED VDKDRRYAID ASIVRIMKSR KVMGHQQLVA ECVEQLSRMF KPDFKAIKKR 730 740 IEDLITRDYL ERDKDNANMY KYLA

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000768 Genomic DNA. Translation: EES19028.1.
RefSeq	XP_002440598.1. XM_002440553.1.
UniGene	Sbi.17936.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	4558.Sb09g003820.1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb09g003820.1; Sb09g003820.1; Sb09g003820.
GeneID	8075980.
KEGG	sbi:SORBI_09g003820.
Organism-specific databases
Gramene	C5Z041.
Phylogenomic databases
eggNOG	COG5647.
HOGENOM	HOG000176712.
KO	K03347.
OMA	LDEGHEN.
ProtClustDB	CLSN2689296.
Family and domain databases
Gene3D	1.10.10.10. 2 hits.
InterPro	IPR016157. Cullin_CS. IPR016158. Cullin_homology. IPR001373. Cullin_N. IPR019559. Cullin_neddylation_domain. IPR016159. Cullin_repeat-like_dom. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF00888. Cullin. 1 hit. PF10557. Cullin_Nedd8. 1 hit. [Graphical view]
SMART	SM00182. CULLIN. 1 hit. SM00884. Cullin_Nedd8. 1 hit. [Graphical view]
SUPFAM	SSF75632. Cullin_homology. 1 hit. SSF74788. Cullin_repeat-like. 1 hit.
PROSITE	PS01256. CULLIN_1. 1 hit. PS50069. CULLIN_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C5Z041_SORBI

Accession

Primary (citable) accession number: C5Z041

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	May 1, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)