C5YUD2 (C5YUD2_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Phosphoribosylformylglycinamidine cyclo-ligase RuleBase RU004370
EC=6.3.3.1 RuleBase RU004370

Gene names

Name:	Sb09g006040 EMBL EES19183.1
ORF Names:	SORBIDRAFT_09g006040 EMBL EES19183.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare)

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	387 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + 2-(formamido)-N(1)-(5-phospho-D-ribosyl)acetamidine = ADP + phosphate + 5-amino-1-(5-phospho-D-ribosyl)imidazole. RuleBase RU004370
Pathway	Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 2/2. RuleBase RU004371
Sequence similarities	Belongs to the AIR synthase family. RuleBase RU004370

Ontologies

Keywords
Molecular function	Ligase RuleBase RU004370
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	'de novo' IMP biosynthetic process Inferred from electronic annotation. Source: InterPro
Molecular function	phosphoribosylformylglycinamidine cyclo-ligase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5YUD2 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 9FB7B2C117B08143	FASTA	387	40,965
	10 20 30 40 50 60 MTTDRLLHFL RAPTGSPAAA PTRAARRGPL QAQGVHFCQG AAVMRRASLS CSGTSSGREG 70 80 90 100 110 120 GLTYKDAGVD IDAGAELVRR IAKMAPGIGG FGGLFPYNDD YLVGSTDGVG TKLKLAFETG 130 140 150 160 170 180 IHDTIGIDLV AMSVNDIVTL GAKPLFFLDY YATSKLDVDL AEKVIKGIRD GCEQSDCALL 190 200 210 220 230 240 GGETAEMPGF YAEGEYDLSG FAVGVVKKDK VIDGKNIVKG DVLIGLPSSG VHSNGFSLVR 250 260 270 280 290 300 RVLEKSGLSL SDQLPRNDGI TTTVGEALMA PTVIYVKQVL EIIKKGGVKG LAHITGGGFT 310 320 330 340 350 360 DNIPRVFPSG LGAKIFTGSW EVPPVFNWLQ QAGNIDDAEM RRTFNMGIGM VLVVSRESAD 370 380 RIIEDTHGSN HAYHIGEVIE GDGVQYV

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed: 19189423] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000768 Genomic DNA. Translation: EES19183.1.
RefSeq	XP_002440753.1. XM_002440708.1.
UniGene	Sbi.10467.
3D structure databases
ProteinModelPortal	C5YUD2.
ModBase	Search...
Protein-protein interaction databases
STRING	C5YUD2.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb09g006040.1; Sb09g006040.1; Sb09g006040.
GeneID	8055712.
KEGG	sbi:SORBI_09g006040.
Phylogenomic databases
GeneTree	EPGT00050000012777.
OMA	PENIPRV.
PhylomeDB	C5YUD2.
ProtClustDB	PLN02557.
Family and domain databases
InterPro	IPR000728. AIR_synth. IPR010918. AIR_synth_C. IPR004733. PurM_cligase. IPR016188. PurM_N-like. [Graphical view]
KO	K01933.
Pfam	PF00586. AIRS. 1 hit. PF02769. AIRS_C. 1 hit. [Graphical view]
SUPFAM	SSF56042. AIR_synth_C. 1 hit. SSF55326. PurM_N-like. 1 hit.
TIGRFAMs	TIGR00878. PurM. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C5YUD2_SORBI

Accession

Primary (citable) accession number: C5YUD2

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	December 14, 2011
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)