C5YSQ1 (C5YSQ1_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein Sb08g004540 EMBL EES15736.1

Gene names

Name:	Sb08g004540 EMBL EES15736.1
ORF Names:	SORBIDRAFT_08g004540 EMBL EES15736.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare)

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	440 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Subcellular location	Golgi apparatus › Golgi stack membrane; Single-pass type II membrane protein By similarity RuleBase RU003832.
Sequence similarities	Belongs to the glycosyltransferase 10 family. RuleBase RU003832

Ontologies

Keywords
Cellular component	Golgi apparatus RuleBase RU003832 Membrane
Domain	Transmembrane RuleBase RU003832
Molecular function	Glycosyltransferase RuleBase RU003832 Transferase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	protein glycosylation Inferred from electronic annotation. Source: InterPro
Cellular component	Golgi cisterna membrane Inferred from electronic annotation. Source: UniProtKB-SubCell integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	fucosyltransferase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5YSQ1 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 0989429ACE80A694	FASTA	440	47,892
	10 20 30 40 50 60 MLFRKRINYV APMLASAFIL LLLLSGYFEL PSISSTSLST PSPLLAAARF PTALDSVGSR 70 80 90 100 110 120 DRDPFTSLLE AFASWDAAVG CPRIRAKLAA TAGVERGLTP PGAGANDTAA EDPAAAAAAA 130 140 150 160 170 180 AVTGGAAWRG AARCEDLAAR HVNVLVKGWT WVPDALDGVY TCRCGVSCVW SKSVAAVDRP 190 200 210 220 230 240 DALLFEGATP PPQRMKGLPL RVYLDLEASR KPTGFEDIFI GYHANDDLQV TYAGKSFHTS 250 260 270 280 290 300 RSYHISTEKR NDALIYWSSS RCLPHRDKLA KDFLSLVPHH SFGRCLNNVG GPDMALSMYP 310 320 330 340 350 360 VCSTNDNGTP HWWDHLHCAM SHYKFVLAIE NTKTESYVTE KLFYALEAGS VPIYFGAPNV 370 380 390 400 410 420 WDFVPPNSII DASKFSSLKE LASYVKMLAN DPVAYAEYHA WRRCGVLGNF GRAREMSLDT 430 440 LPCRLCEVVS KRGGKSADAL

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed: 19189423] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000767 Genomic DNA. Translation: EES15736.1.
RefSeq	XP_002441898.1. XM_002441853.1.
UniGene	Sbi.6752.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb08g004540.1; Sb08g004540.1; Sb08g004540.
GeneID	8076283.
KEGG	sbi:SORBI_08g004540.
Phylogenomic databases
GeneTree	EPGT00070000030487.
OMA	LLFETTT.
PhylomeDB	C5YSQ1.
ProtClustDB	CLSN2680641.
Family and domain databases
InterPro	IPR017177. Alpha-1_3/4-FUT_pln. IPR001503. Glyco_trans_10. [Graphical view]
KO	K14412.
PANTHER	PTHR11929. Glyco_trans_10. 1 hit.
Pfam	PF00852. Glyco_transf_10. 1 hit. [Graphical view]
PIRSF	PIRSF037334. Alpha1_3/4FUT_pln. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C5YSQ1_SORBI

Accession

Primary (citable) accession number: C5YSQ1

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	December 14, 2011
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)