C5YS38 (C5YS38_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein Sb08g003410 EMBL EES16662.1

Gene names

Name:	Sb08g003410 EMBL EES16662.1
ORF Names:	SORBIDRAFT_08g003410 EMBL EES16662.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare)

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	559 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	SRP-dependent cotranslational protein targeting to membrane Inferred from electronic annotation. Source: InterPro
Molecular function	7S RNA binding Inferred from electronic annotation. Source: InterPro GTP binding Inferred from electronic annotation. Source: InterPro nucleoside-triphosphatase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5YS38 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: BCFD44B303AEA421	FASTA	559	61,490
	10 20 30 40 50 60 MEATTALALS SSLATARRSP EKAAAASSLR LRNFSATSSL HHLRAARSPA PRSHPSSSPF 70 80 90 100 110 120 QGWRRRGRAG GLVVRAEMFG QLTTGLESAW NKLRGVDILT KENIAEPMRD IRRALLEADV 130 140 150 160 170 180 SLPVVRRFIE SVSEKAVGTD VIRGVRPDQQ LVKVVNDELV QLMGGEVSDL VFAKSGPTII 190 200 210 220 230 240 LLAGLQGVGK TTVCAKLAFY LKKMGKSCML VAADVYRPAA IDQLTILGKK VGVPVYSEGT 250 260 270 280 290 300 EAKPSQIAKN GLKEAKVNKA DVIIVDTAGR LQVDKSMMNE LKEVKKAVNP TEVLLVVDAM 310 320 330 340 350 360 TGQEAAGLVS SFNDEIGITG AILTKLDGDS RGGAALSVKE VSGKPIKFVG QGERIEDLEP 370 380 390 400 410 420 FYPDRMAQRI LGMGDVLSFV EKAQEVMRQE DAEELQKKIL SAKFNFNDFL KQTQMIAQMG 430 440 450 460 470 480 SFSRLIGMIP GMNKVTPAQI REAEKNLKFM ESMINVMTPE ERERPELLAE SRERRKRVAK 490 500 510 520 530 540 DSGKTEQQVG QLVAQLFQMR AKMQKMMGAI QGKESPDMDE LMESMKAEEQ AAAGTGRRRR 550 KYGNLRQRQL DAMRGFRRR

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed: 19189423] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000767 Genomic DNA. Translation: EES16662.1.
RefSeq	XP_002442824.1. XM_002442779.1.
UniGene	Sbi.14227.
3D structure databases
ProteinModelPortal	C5YS38.
ModBase	Search...
Protein-protein interaction databases
STRING	C5YS38.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb08g003410.1; Sb08g003410.1; Sb08g003410.
GeneID	8079832.
KEGG	sbi:SORBI_08g003410.
Phylogenomic databases
GeneTree	EPGT00070000029738.
OMA	NVEIGIT.
PhylomeDB	C5YS38.
ProtClustDB	CLSN2686225.
Family and domain databases
InterPro	IPR003593. ATPase_AAA+_core. IPR000897. Signal_recog_part_SRP54_GTPase. IPR013822. Signal_recog_particl_SRP54_hlx. IPR004780. Signal_recog_particle_SRP. IPR004125. Signal_recog_particle_SRP54_M. [Graphical view]
Gene3D	G3DSA:1.20.120.140. SRP54_helical. 1 hit. G3DSA:1.10.260.30. SRP54_M. 1 hit.
KO	K03106.
PANTHER	PTHR11564:SF7. SRP_sub. 1 hit.
Pfam	PF00448. SRP54. 1 hit. PF02881. SRP54_N. 1 hit. PF02978. SRP_SPB. 1 hit. [Graphical view]
SMART	SM00382. AAA. 1 hit. SM00962. SRP54. 1 hit. SM00963. SRP54_N. 1 hit. [Graphical view]
SUPFAM	SSF47446. Signal_recog_particle_SRP54_M. 1 hit. SSF47364. SRP54. 1 hit.
TIGRFAMs	TIGR00959. Ffh. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C5YS38_SORBI

Accession

Primary (citable) accession number: C5YS38

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	December 14, 2011
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)