C5YKQ6 (C5YKQ6_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein Sb07g019863 EMBL EES14954.1

Gene names

Name:	Sb07g019863 EMBL EES14954.1
ORF Names:	SORBIDRAFT_07g019863 EMBL EES14954.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	506 AA.
Sequence status	Fragment.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	S-adenosyl-L-methionine + L-lysine-[histone] = S-adenosyl-L-homocysteine + N(6)-methyl-L-lysine-[histone]. SAAS SAAS001214 S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N(6)-methyl-L-lysine.
Subcellular location	Nucleus By similarity.
Sequence similarities	Contains 1 SET domain. RuleBase RU004538 SAAS SAAS001214 Contains 1 post-SET domain. RuleBase RU004541 SAAS SAAS001214 Contains 1 pre-SET domain. SAAS SAAS001214

Ontologies

Keywords
Cellular component	Chromosome SAAS SAAS007728 Nucleus RuleBase RU004542 SAAS SAAS001214
Molecular function	Methyltransferase RuleBase RU004542 SAAS SAAS001214 RuleBase RU004541 Transferase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular_component	chromosome Inferred from electronic annotation. Source: UniProtKB-KW nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	histone-lysine N-methyltransferase activity Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL EES14954.1
	Non-terminal residue	506	1	EMBL EES14954.1

Sequences

	Sequence		Length	Mass (Da)
	C5YKQ6 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: EFC2481B9E43C160	FASTA	506	56,286
	10 20 30 40 50 60 DARSKVRKLL QLYRVTCQKL TQVEVQGNPI VGRIYLEAAK IVKKDPIYAK LGAIVGNIPG 70 80 90 100 110 120 VEVGDEFYYR IELAIVGLHR LHQGGIDTSK VNGVPIAISV VASGGYRDEL SSSGELIYTG 130 140 150 160 170 180 SGGKAGGNKD GDDQKLEWGN LALKNCIETK TPVRVIHGFK GQNRSEFGKE TSTFTYDGLY 190 200 210 220 230 240 EVVECWREGP KGGMVFKYKL WRIAGQPKLT LHVVKAIRKS KSREGLCLPD ISQGSERIPI 250 260 270 280 290 300 CVINTVDDMR LAPLKYITKL TYPTWCEIVP QNGCNCTNHC SDTIRCSCAW KNGGEIPFNC 310 320 330 340 350 360 DNAIVKAKRL IYECGPWCRC PPTCYNRVSQ HGVKIPLEIF KTGKTGWGVR SLSSISSGSF 370 380 390 400 410 420 ICEYTGELLK GEEAENRQND EYLFDIGRNY YDEELWEGIP PVVDVQSSTS SSGTMKGFTI 430 440 450 460 470 480 DGAECSNVGR FINHSCSPNL YAQNVLWDHG NMKMPHIMLF AVENIPPLQE LTYHYNYKVG 490 500 SVHDENGNEK VKHCYCGASA CRGRLY

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000766 Genomic DNA. Translation: EES14954.1.
RefSeq	XP_002445459.1. XM_002445414.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb07g019863.1; Sb07g019863.1; Sb07g019863.
GeneID	8070041.
KEGG	sbi:SORBI_07g019863.
Organism-specific databases
Gramene	C5YKQ6.
Phylogenomic databases
eggNOG	COG2940.
HOGENOM	HOG000084575.
KO	K11420.
ProtClustDB	CLSN2720006.
Family and domain databases
Gene3D	2.30.280.10. 1 hit.
InterPro	IPR025794. Hist-Lys_N-MeTrfase_plant. IPR003616. Post-SET_dom. IPR007728. Pre-SET_dom. IPR001214. SET_dom. IPR003105. SRA_YDG. [Graphical view]
Pfam	PF05033. Pre-SET. 1 hit. PF00856. SET. 1 hit. PF02182. YDG_SRA. 1 hit. [Graphical view]
SMART	SM00508. PostSET. 1 hit. SM00317. SET. 1 hit. [Graphical view]
PROSITE	PS50868. POST_SET. 1 hit. PS50867. PRE_SET. 1 hit. PS51575. SAM_MT43_SUVAR39_2. 1 hit. PS50280. SET. 1 hit. PS51015. YDG. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C5YKQ6_SORBI

Accession

Primary (citable) accession number: C5YKQ6

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	March 6, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)