C5YKG8 (C5YKG8_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Histone deacetylase PIRNR PIRNR037913
EC=3.5.1.98 PIRNR PIRNR037913

Gene names

Name:	Sb07g018230 EMBL EES13744.1
ORF Names:	SORBIDRAFT_07g018230 EMBL EES13744.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	458 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone. PIRNR PIRNR037913
Subcellular location	Nucleus By similarity PIRNR PIRNR037913.
Sequence similarities	Belongs to the histone deacetylase family. HD Type 1 subfamily. PIRNR PIRNR037913

Ontologies

Keywords
Biological process	Transcription Transcription regulation PIRNR PIRNR037913
Cellular component	Nucleus PIRNR PIRNR037913
Molecular function	Chromatin regulator PIRNR PIRNR037913 Hydrolase PIRNR PIRNR037913 SAAS SAAS000286
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	histone H3 deacetylation Inferred from electronic annotation. Source: GOC histone H4 deacetylation Inferred from electronic annotation. Source: GOC posttranscriptional gene silencing Inferred from electronic annotation. Source: EnsemblPlants/Gramene regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW response to abscisic acid stimulus Inferred from electronic annotation. Source: EnsemblPlants/Gramene response to salt stress Inferred from electronic annotation. Source: EnsemblPlants/Gramene transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	chloroplast envelope Inferred from electronic annotation. Source: EnsemblPlants/Gramene nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	NAD-dependent histone deacetylase activity (H3-K14 specific) Inferred from electronic annotation. Source: EC NAD-dependent histone deacetylase activity (H3-K18 specific) Inferred from electronic annotation. Source: EC NAD-dependent histone deacetylase activity (H3-K9 specific) Inferred from electronic annotation. Source: EC NAD-dependent histone deacetylase activity (H4-K16 specific) Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5YKG8 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: C5CF51B33021A1C3	FASTA	458	50,952
	10 20 30 40 50 60 MAASGEGASL PSPAGGEDAH RRRVSYFYEP SIGDYYYGQG HPMKPHRIRM AHSLVVHYGL 70 80 90 100 110 120 HRLLELSRPY PASEADIRRF HSDDYVAFLA SATGNPSVLD PRAVKRFNVG EDCPVFDGLF 130 140 150 160 170 180 PFCQASAGGS IGAAVKLNRG DADITVNWAG GLHHAKKSEA SGFCYVNDIV LAILELLKFH 190 200 210 220 230 240 RRVLYVDIDV HHGDGVEEAF FTTNRVMTVS FHKYGDFFPG TGHITDVGAA EGKHYALNVP 250 260 270 280 290 300 LSDGIDDATF RDLFQCIIKK VMEVYQPDVV VLQCGADSLA GDRLGCFNLS VKGHADCLRF 310 320 330 340 350 360 LRSYNVPMMV LGGGGYTIRN VARCWCYETA VAVGVEPDNK LPYNDYYEYF GPDYILHIQP 370 380 390 400 410 420 KSVENQNTTK DLENIKNMIL ESLSKIEHVP STQFHDRPSD PEAPEEKEED MDKRPAQRSR 430 440 450 LWSGGAYDSD TEDPDNLKSE SKDVTANLQM KDEPKNDL

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000766 Genomic DNA. Translation: EES13744.1.
RefSeq	XP_002444249.1. XM_002444204.1.
UniGene	Sbi.1660.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb07g018230.1; Sb07g018230.1; Sb07g018230.
GeneID	8073075.
KEGG	sbi:SORBI_07g018230.
Organism-specific databases
Gramene	C5YKG8.
Phylogenomic databases
eggNOG	COG0123.
HOGENOM	HOG000225180.
KO	K06067.
OMA	NPWSVGR.
ProtClustDB	CLSN2687541.
Family and domain databases
Gene3D	3.40.800.20. 1 hit.
InterPro	IPR000286. His_deacetylse. IPR003084. His_deacetylse_1. IPR023801. His_deacetylse_dom. [Graphical view]
PANTHER	PTHR10625. PTHR10625. 1 hit.
Pfam	PF00850. Hist_deacetyl. 1 hit. [Graphical view]
PIRSF	PIRSF037913. His_deacetylse_1. 1 hit.
PRINTS	PR01270. HDASUPER. PR01271. HISDACETLASE.
ProtoNet	Search...

Entry information

Entry name

C5YKG8_SORBI

Accession

Primary (citable) accession number: C5YKG8

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	March 6, 2013
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)