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C5YKG8

- C5YKG8_SORBI

UniProt

C5YKG8 - C5YKG8_SORBI

Protein

Histone deacetylase

Gene

Sb07g018230

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 33 (01 Oct 2014)
      Sequence version 1 (01 Sep 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone.UniRule annotation

    GO - Molecular functioni

    1. NAD-dependent histone deacetylase activity (H3-K14 specific) Source: UniProtKB-EC
    2. NAD-dependent histone deacetylase activity (H3-K18 specific) Source: UniProtKB-EC
    3. NAD-dependent histone deacetylase activity (H3-K9 specific) Source: UniProtKB-EC
    4. NAD-dependent histone deacetylase activity (H4-K16 specific) Source: UniProtKB-EC

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: UniProtKB-KW
    2. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Molecular functioni

    Chromatin regulatorUniRule annotation, HydrolaseUniRule annotationSAAS annotation

    Keywords - Biological processi

    Transcription, Transcription regulationUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Histone deacetylaseUniRule annotation (EC:3.5.1.98UniRule annotation)
    Gene namesi
    Name:Sb07g018230Imported
    ORF Names:SORBIDRAFT_07g018230Imported
    OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
    Taxonomic identifieri4558 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
    ProteomesiUP000000768: Chromosome 7

    Organism-specific databases

    GrameneiC5YKG8.

    Subcellular locationi

    Nucleus UniRule annotation

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    NucleusUniRule annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi4558.Sb07g018230.1.

    Structurei

    3D structure databases

    ProteinModelPortaliC5YKG8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the histone deacetylase family. HD Type 1 subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0123.
    HOGENOMiHOG000225180.
    KOiK06067.
    OMAiIEHVPST.

    Family and domain databases

    Gene3Di3.40.800.20. 1 hit.
    InterProiIPR000286. His_deacetylse.
    IPR003084. His_deacetylse_1.
    IPR023801. His_deacetylse_dom.
    [Graphical view]
    PANTHERiPTHR10625. PTHR10625. 1 hit.
    PfamiPF00850. Hist_deacetyl. 1 hit.
    [Graphical view]
    PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
    PRINTSiPR01270. HDASUPER.
    PR01271. HISDACETLASE.

    Sequencei

    Sequence statusi: Complete.

    C5YKG8-1 [UniParc]FASTAAdd to Basket

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    MAASGEGASL PSPAGGEDAH RRRVSYFYEP SIGDYYYGQG HPMKPHRIRM    50
    AHSLVVHYGL HRLLELSRPY PASEADIRRF HSDDYVAFLA SATGNPSVLD 100
    PRAVKRFNVG EDCPVFDGLF PFCQASAGGS IGAAVKLNRG DADITVNWAG 150
    GLHHAKKSEA SGFCYVNDIV LAILELLKFH RRVLYVDIDV HHGDGVEEAF 200
    FTTNRVMTVS FHKYGDFFPG TGHITDVGAA EGKHYALNVP LSDGIDDATF 250
    RDLFQCIIKK VMEVYQPDVV VLQCGADSLA GDRLGCFNLS VKGHADCLRF 300
    LRSYNVPMMV LGGGGYTIRN VARCWCYETA VAVGVEPDNK LPYNDYYEYF 350
    GPDYILHIQP KSVENQNTTK DLENIKNMIL ESLSKIEHVP STQFHDRPSD 400
    PEAPEEKEED MDKRPAQRSR LWSGGAYDSD TEDPDNLKSE SKDVTANLQM 450
    KDEPKNDL 458
    Length:458
    Mass (Da):50,952
    Last modified:September 1, 2009 - v1
    Checksum:iC5CF51B33021A1C3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000766 Genomic DNA. Translation: EES13744.1.
    RefSeqiXP_002444249.1. XM_002444204.1.
    UniGeneiSbi.1660.

    Genome annotation databases

    EnsemblPlantsiSb07g018230.1; Sb07g018230.1; Sb07g018230.
    GeneIDi8073075.
    KEGGisbi:SORBI_07g018230.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000766 Genomic DNA. Translation: EES13744.1 .
    RefSeqi XP_002444249.1. XM_002444204.1.
    UniGenei Sbi.1660.

    3D structure databases

    ProteinModelPortali C5YKG8.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 4558.Sb07g018230.1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi Sb07g018230.1 ; Sb07g018230.1 ; Sb07g018230 .
    GeneIDi 8073075.
    KEGGi sbi:SORBI_07g018230.

    Organism-specific databases

    Gramenei C5YKG8.

    Phylogenomic databases

    eggNOGi COG0123.
    HOGENOMi HOG000225180.
    KOi K06067.
    OMAi IEHVPST.

    Family and domain databases

    Gene3Di 3.40.800.20. 1 hit.
    InterProi IPR000286. His_deacetylse.
    IPR003084. His_deacetylse_1.
    IPR023801. His_deacetylse_dom.
    [Graphical view ]
    PANTHERi PTHR10625. PTHR10625. 1 hit.
    Pfami PF00850. Hist_deacetyl. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF037913. His_deacetylse_1. 1 hit.
    PRINTSi PR01270. HDASUPER.
    PR01271. HISDACETLASE.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. BTx623Imported.

    Entry informationi

    Entry nameiC5YKG8_SORBI
    AccessioniPrimary (citable) accession number: C5YKG8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 1, 2009
    Last sequence update: September 1, 2009
    Last modified: October 1, 2014
    This is version 33 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3