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C5YKG8 (C5YKG8_SORBI) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Histone deacetylase PIRNR PIRNR037913

EC=3.5.1.98 PIRNR PIRNR037913
Gene names
Name:Sb07g018230 EMBL EES13744.1
ORF Names:SORBIDRAFT_07g018230 EMBL EES13744.1
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]
Taxonomic identifier4558 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum

Protein attributes

Sequence length458 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone. PIRNR PIRNR037913

Subcellular location

Nucleus By similarity PIRNR PIRNR037913.

Sequence similarities

Belongs to the histone deacetylase family. HD Type 1 subfamily. PIRNR PIRNR037913

Sequences

Sequence LengthMass (Da)Tools
C5YKG8 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: C5CF51B33021A1C3

FASTA45850,952
        10         20         30         40         50         60 
MAASGEGASL PSPAGGEDAH RRRVSYFYEP SIGDYYYGQG HPMKPHRIRM AHSLVVHYGL 

        70         80         90        100        110        120 
HRLLELSRPY PASEADIRRF HSDDYVAFLA SATGNPSVLD PRAVKRFNVG EDCPVFDGLF 

       130        140        150        160        170        180 
PFCQASAGGS IGAAVKLNRG DADITVNWAG GLHHAKKSEA SGFCYVNDIV LAILELLKFH 

       190        200        210        220        230        240 
RRVLYVDIDV HHGDGVEEAF FTTNRVMTVS FHKYGDFFPG TGHITDVGAA EGKHYALNVP 

       250        260        270        280        290        300 
LSDGIDDATF RDLFQCIIKK VMEVYQPDVV VLQCGADSLA GDRLGCFNLS VKGHADCLRF 

       310        320        330        340        350        360 
LRSYNVPMMV LGGGGYTIRN VARCWCYETA VAVGVEPDNK LPYNDYYEYF GPDYILHIQP 

       370        380        390        400        410        420 
KSVENQNTTK DLENIKNMIL ESLSKIEHVP STQFHDRPSD PEAPEEKEED MDKRPAQRSR 

       430        440        450 
LWSGGAYDSD TEDPDNLKSE SKDVTANLQM KDEPKNDL 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000766 Genomic DNA. Translation: EES13744.1.
RefSeqXP_002444249.1. XM_002444204.1.
UniGeneSbi.1660.

3D structure databases

ProteinModelPortalC5YKG8.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING4558.Sb07g018230.1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsSb07g018230.1; Sb07g018230.1; Sb07g018230.
GeneID8073075.
KEGGsbi:SORBI_07g018230.

Organism-specific databases

GrameneC5YKG8.

Phylogenomic databases

eggNOGCOG0123.
HOGENOMHOG000225180.
KOK06067.
OMAIEHVPST.

Family and domain databases

Gene3D3.40.800.20. 1 hit.
InterProIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERPTHR10625. PTHR10625. 1 hit.
PfamPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSPR01270. HDASUPER.
PR01271. HISDACETLASE.
ProtoNetSearch...

Entry information

Entry nameC5YKG8_SORBI
AccessionPrimary (citable) accession number: C5YKG8
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 14, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)