C5YIV3 (C5YIV3_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein Sb07g006160 EMBL EES14712.1

Gene names

Name:	Sb07g006160 EMBL EES14712.1
ORF Names:	SORBIDRAFT_07g006160 EMBL EES14712.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare)

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	347 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	porphyrin-containing compound biosynthetic process Inferred from electronic annotation. Source: InterPro
Molecular function	coproporphyrinogen oxidase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5YIV3 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 7BF3F7B074BBB9FB	FASTA	347	38,606
	10 20 30 40 50 60 MEGGTSEPAA PATFLRGEEG ASPESARARF ERMIRRVQAD VCAELEAVEG SGTSNGGGGG 70 80 90 100 110 120 ALFREDAWTR PGGGGGISRV LQGGRVFEKA AVNVSVVYGV MPPEAYRAAR PEAAAAAAAG 130 140 150 160 170 180 GDKAGPVPFF AAGISSVIHP VNPFAPTMHF NYRYFETEAP KDAPGAPRQW WFGGGTDLTP 190 200 210 220 230 240 SYIIEEDIKH FHSVQKQVCD SYDPSFYPRF KKWCDDYFYI KHRGERRGVG GIFFDDLNDY 250 260 270 280 290 300 DQETLLRFAT DCADSVLPAY IPIIERRKDT LFTEEHKAWQ QLRRGRYVEF NLVYDRGTTF 310 320 330 340 GLKTGGRIES ILVSLPLTAR WEYDHKPEVG SEEWKLLDTC INPREWI

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed: 19189423] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000766 Genomic DNA. Translation: EES14712.1.
RefSeq	XP_002445217.1. XM_002445172.1.
UniGene	Sbi.10660.
3D structure databases
ProteinModelPortal	C5YIV3.
ModBase	Search...
Protein-protein interaction databases
STRING	C5YIV3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb07g006160.1; Sb07g006160.1; Sb07g006160.
GeneID	8085159.
KEGG	sbi:SORBI_07g006160.
Phylogenomic databases
GeneTree	EPGT00050000012010.
OMA	RTASWAY.
PhylomeDB	C5YIV3.
ProtClustDB	PLN02873.
Family and domain databases
InterPro	IPR001260. Coprogen_oxidase_aer. IPR018375. Coprogen_oxidase_CS. [Graphical view]
Gene3D	G3DSA:3.40.1500.10. Coprogen_oxidas. 1 hit.
KO	K00228.
PANTHER	PTHR10755. Coprogen_oxidas. 1 hit.
Pfam	PF01218. Coprogen_oxidas. 1 hit. [Graphical view]
PIRSF	PIRSF000166. Coproporphyri_ox. 1 hit.
PRINTS	PR00073. COPRGNOXDASE.
SUPFAM	SSF102886. Coprogen_oxidas. 1 hit.
PROSITE	PS01021. COPROGEN_OXIDASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C5YIV3_SORBI

Accession

Primary (citable) accession number: C5YIV3

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	December 14, 2011
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)