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C5YFT2 (C5YFT2_SORBI) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Histone deacetylase PIRNR PIRNR037913

EC=3.5.1.98 PIRNR PIRNR037913
Gene names
Name:Sb06g015420 EMBL EES10729.1
ORF Names:SORBIDRAFT_06g015420 EMBL EES10729.1
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]
Taxonomic identifier4558 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum

Protein attributes

Sequence length430 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone. PIRNR PIRNR037913

Subcellular location

Nucleus By similarity PIRNR PIRNR037913.

Sequence similarities

Belongs to the histone deacetylase family. HD Type 1 subfamily. PIRNR PIRNR037913

Sequences

Sequence LengthMass (Da)Tools
C5YFT2 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: 5799C024B651F3C0

FASTA43049,217
        10         20         30         40         50         60 
MLEKDRISYF YDGDVGNVYF GPNHPMKPHR LCMTHHLVLS YGLHKKMEIY RPHKAYPIEL 

        70         80         90        100        110        120 
AQFHSADYVE FLHRITPDTQ HLYASELTRY NLGEDCPVFD NLFEFCQIYT GGTLDAARRL 

       130        140        150        160        170        180 
NHKTCDIAIN WAGGLHHAKK CEASGFCYIN DLVLGILELL KYHARVLYID IDVHHGDGVE 

       190        200        210        220        230        240 
EAFYFTDRVM TVSFHKYGDL FFPGTGDIKD IGEREGKYYA INIPLKDGID DSSFTRLFKT 

       250        260        270        280        290        300 
IIAKVIETYL PGAIVLQCGA DSLARDRLGC FNLSIEGHAE CVKFVKKFNI PLLVTGGGGY 

       310        320        330        340        350        360 
TKENVARCWA VETGVLLDTE LPNEIPNNEY IEYFAPDYTL KVPNLNMDNL NSKTYLSSIK 

       370        380        390        400        410        420 
VQVMESLRSI QHAPGVQMQE VPPDFYIPDF DEDELDPDER VDQHTQDKQI HRDDEYYEGD 

       430 
NDNDHDDGAR 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000765 Genomic DNA. Translation: EES10729.1.
RefSeqXP_002446401.1. XM_002446356.1.

3D structure databases

ProteinModelPortalC5YFT2.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING4558.Sb06g015420.1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsSb06g015420.1; Sb06g015420.1; Sb06g015420.
GeneID8075265.
KEGGsbi:SORBI_06g015420.

Organism-specific databases

GrameneC5YFT2.

Phylogenomic databases

eggNOGCOG0123.
HOGENOMHOG000225180.
KOK06067.
OMAGDVGNVY.

Family and domain databases

Gene3D3.40.800.20. 1 hit.
InterProIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERPTHR10625. PTHR10625. 1 hit.
PfamPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSPR01270. HDASUPER.
PR01271. HISDACETLASE.
ProtoNetSearch...

Entry information

Entry nameC5YFT2_SORBI
AccessionPrimary (citable) accession number: C5YFT2
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 14, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)