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C5YFJ3

- C5YFJ3_SORBI

UniProt

C5YFJ3 - C5YFJ3_SORBI

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Protein
Submitted name:

Putative uncharacterized protein Sb06g027820

Gene

Sb06g027820

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: EnsemblPlants/Gramene
  2. DNA binding Source: EnsemblPlants/Gramene
  3. DNA ligase (ATP) activity Source: EnsemblPlants/Gramene
  4. metal ion binding Source: EnsemblPlants/Gramene

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: EnsemblPlants/Gramene
  2. DNA recombination Source: EnsemblPlants/Gramene
  3. DNA replication Source: EnsemblPlants/Gramene
  4. double-strand break repair Source: EnsemblPlants/Gramene
  5. response to X-ray Source: EnsemblPlants/Gramene
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized protein Sb06g027820Imported
Gene namesi
Name:Sb06g027820Imported
ORF Names:SORBIDRAFT_06g027820Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
ProteomesiUP000000768: Chromosome 6

Organism-specific databases

GrameneiC5YFJ3.

Subcellular locationi

GO - Cellular componenti

  1. apoplast Source: EnsemblPlants/Gramene
  2. nucleus Source: EnsemblPlants/Gramene
  3. plasmodesma Source: EnsemblPlants/Gramene
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb06g027820.1.

Structurei

3D structure databases

ProteinModelPortaliC5YFJ3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000083793.
InParanoidiC5YFJ3.
KOiK10777.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProiIPR001357. BRCT_dom.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR029710. LIG4.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PANTHERiPTHR10459:SF7. PTHR10459:SF7. 1 hit.
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 2 hits.
PF04675. DNA_ligase_A_N. 1 hit.
PF12738. PTCB-BRCT. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
PROSITEiPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5YFJ3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAAKVRFSLL VAMFQAMSGD KSSAKKRSRL RAFLDRAYVP SGGRDDYFSA
60 70 80 90 100
LRLVLPGLDR ERGTYGLKEA TLAAVLVDAL GIAKDSADAV RLTNWRRGGG
110 120 130 140 150
FRNAGNFGLV AAEVLQRRQG LTSGGLTIKE VNDALDRLAA TENRSEKASI
160 170 180 190 200
LSNLIKKTNA AEMKWLLMII LKDLKLGISE KSIFEEFHPD AQDLFNVTCD
210 220 230 240 250
LKFVCEKLND RSQRHKRQDI EIGKAVRPQL AMRVRDASAA WKKLHGKQVV
260 270 280 290 300
AECKFDGDRI QIHKNGEEIH FFSRCILDGE MLVWDTVLNR FAEFGSNQEI
310 320 330 340 350
AKAAREGLET DRQRCIDVAF DILYAGDTSV IHQSLTERHQ ILQKVVKPLK
360 370 380 390 400
GHLEILIPTG GLNVRRPSDE PCWSIIAHNV EDVERFFKET IENRDEGIIL
410 420 430 440 450
KDLDSKWEPG DRNGKWLKLK PDYIHAGADL DVIIIGGYYG SGRRGREVAQ
460 470 480 490 500
FLVGLAVPSD DNSYPKRFLS FCRVGTGLSD EERDALVTKL KPYFRKNEYP
510 520 530 540 550
KKPPKFYEVT NNSKERPDVW IESPDKSVII SVTSDIRTIK SEVFASPYCL
560 570 580 590 600
RFPRIQRVRY DKPWHECLDV QAFVDIVHSS NGTTQRVADD NSLKNDDTNR
610 620 630 640 650
SRTNKKVEKK KCVSVIPSHL MKTDVSVVEN GGSFSMNLND SVTHCIAAEK
660 670 680 690 700
KGIKYQAALR QGRIIHYEWI LDCCKEKHLL RLQPRYILFL ADFARHKFPE
710 720 730 740 750
EIDSYADYYY WDIEIADLKQ IFSNIDKVAG DSNMVNQYKK KHCIDERFCF
760 770 780 790 800
FQGCCVYLHN APLVNADYNV ISDLALKRVK QDLTMHGGQV CSSIAPATHL
810 820 830 840 850
VVVSVLQAYN FDNLYKSFPP AERRYLHDKR LHVVSNKWLE DSVEKQMKLS
860 870 880 890 900
ETAYSLKPDT LEELEIERSE ENVQPPDHKL EEHREVERSH AKNVPRKRTR
910 920 930 940 950
PTSSRTARAA PRPVRRMRPR RGNQKAKIGD DVESEESGPS ECQDDQNLDT
960 970 980 990 1000
DDTSKIEEGI TSKKKGLPPP ASKPARRTRA ARGNQHTKID DGGSEESGPC
1010 1020 1030 1040 1050
ETGQDDQKLD TDYISNMEVD NSDKDCGPPP GAQLFTLGEQ EAKGVKLNTV
1060 1070 1080 1090 1100
EEKPDSPFQR TTAAEAMSSA PGDKIEQMAD PLHAMLLDML PLLGKKGTED
1110 1120 1130 1140 1150
ASRAPLPKAE KDPPAGGSST SNSEILAPDA GTSGVPAPDP NAAPPPKKKK
1160
VSYKDVASEL LKDW
Length:1,164
Mass (Da):130,901
Last modified:September 1, 2009 - v1
Checksum:i0D1771296F8C8BC4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000765 Genomic DNA. Translation: EES12813.1.
RefSeqiXP_002448485.1. XM_002448440.1.
UniGeneiSbi.794.

Genome annotation databases

EnsemblPlantsiSb06g027820.1; Sb06g027820.1; Sb06g027820.
GeneIDi8072302.
KEGGisbi:SORBI_06g027820.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000765 Genomic DNA. Translation: EES12813.1 .
RefSeqi XP_002448485.1. XM_002448440.1.
UniGenei Sbi.794.

3D structure databases

ProteinModelPortali C5YFJ3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 4558.Sb06g027820.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi Sb06g027820.1 ; Sb06g027820.1 ; Sb06g027820 .
GeneIDi 8072302.
KEGGi sbi:SORBI_06g027820.

Organism-specific databases

Gramenei C5YFJ3.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000083793.
InParanoidi C5YFJ3.
KOi K10777.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProi IPR001357. BRCT_dom.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR029710. LIG4.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
PANTHERi PTHR10459:SF7. PTHR10459:SF7. 1 hit.
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 2 hits.
PF04675. DNA_ligase_A_N. 1 hit.
PF12738. PTCB-BRCT. 1 hit.
[Graphical view ]
SMARTi SM00292. BRCT. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
PROSITEi PS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. BTx623Imported.

Entry informationi

Entry nameiC5YFJ3_SORBI
AccessioniPrimary (citable) accession number: C5YFJ3
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: October 29, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3