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C5YFJ3 (C5YFJ3_SORBI) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Sb06g027820 EMBL EES12813.1
ORF Names:SORBIDRAFT_06g027820 EMBL EES12813.1
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]
Taxonomic identifier4558 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum

Protein attributes

Sequence length1164 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
C5YFJ3 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: 0D1771296F8C8BC4

FASTA1,164130,901
        10         20         30         40         50         60 
MAAKVRFSLL VAMFQAMSGD KSSAKKRSRL RAFLDRAYVP SGGRDDYFSA LRLVLPGLDR 

        70         80         90        100        110        120 
ERGTYGLKEA TLAAVLVDAL GIAKDSADAV RLTNWRRGGG FRNAGNFGLV AAEVLQRRQG 

       130        140        150        160        170        180 
LTSGGLTIKE VNDALDRLAA TENRSEKASI LSNLIKKTNA AEMKWLLMII LKDLKLGISE 

       190        200        210        220        230        240 
KSIFEEFHPD AQDLFNVTCD LKFVCEKLND RSQRHKRQDI EIGKAVRPQL AMRVRDASAA 

       250        260        270        280        290        300 
WKKLHGKQVV AECKFDGDRI QIHKNGEEIH FFSRCILDGE MLVWDTVLNR FAEFGSNQEI 

       310        320        330        340        350        360 
AKAAREGLET DRQRCIDVAF DILYAGDTSV IHQSLTERHQ ILQKVVKPLK GHLEILIPTG 

       370        380        390        400        410        420 
GLNVRRPSDE PCWSIIAHNV EDVERFFKET IENRDEGIIL KDLDSKWEPG DRNGKWLKLK 

       430        440        450        460        470        480 
PDYIHAGADL DVIIIGGYYG SGRRGREVAQ FLVGLAVPSD DNSYPKRFLS FCRVGTGLSD 

       490        500        510        520        530        540 
EERDALVTKL KPYFRKNEYP KKPPKFYEVT NNSKERPDVW IESPDKSVII SVTSDIRTIK 

       550        560        570        580        590        600 
SEVFASPYCL RFPRIQRVRY DKPWHECLDV QAFVDIVHSS NGTTQRVADD NSLKNDDTNR 

       610        620        630        640        650        660 
SRTNKKVEKK KCVSVIPSHL MKTDVSVVEN GGSFSMNLND SVTHCIAAEK KGIKYQAALR 

       670        680        690        700        710        720 
QGRIIHYEWI LDCCKEKHLL RLQPRYILFL ADFARHKFPE EIDSYADYYY WDIEIADLKQ 

       730        740        750        760        770        780 
IFSNIDKVAG DSNMVNQYKK KHCIDERFCF FQGCCVYLHN APLVNADYNV ISDLALKRVK 

       790        800        810        820        830        840 
QDLTMHGGQV CSSIAPATHL VVVSVLQAYN FDNLYKSFPP AERRYLHDKR LHVVSNKWLE 

       850        860        870        880        890        900 
DSVEKQMKLS ETAYSLKPDT LEELEIERSE ENVQPPDHKL EEHREVERSH AKNVPRKRTR 

       910        920        930        940        950        960 
PTSSRTARAA PRPVRRMRPR RGNQKAKIGD DVESEESGPS ECQDDQNLDT DDTSKIEEGI 

       970        980        990       1000       1010       1020 
TSKKKGLPPP ASKPARRTRA ARGNQHTKID DGGSEESGPC ETGQDDQKLD TDYISNMEVD 

      1030       1040       1050       1060       1070       1080 
NSDKDCGPPP GAQLFTLGEQ EAKGVKLNTV EEKPDSPFQR TTAAEAMSSA PGDKIEQMAD 

      1090       1100       1110       1120       1130       1140 
PLHAMLLDML PLLGKKGTED ASRAPLPKAE KDPPAGGSST SNSEILAPDA GTSGVPAPDP 

      1150       1160 
NAAPPPKKKK VSYKDVASEL LKDW 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000765 Genomic DNA. Translation: EES12813.1.
RefSeqXP_002448485.1. XM_002448440.1.
UniGeneSbi.794.

3D structure databases

ProteinModelPortalC5YFJ3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING4558.Sb06g027820.1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsSb06g027820.1; Sb06g027820.1; Sb06g027820.
GeneID8072302.
KEGGsbi:SORBI_06g027820.

Organism-specific databases

GrameneC5YFJ3.

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000083793.
KOK10777.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProIPR001357. BRCT_dom.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 2 hits.
PF04675. DNA_ligase_A_N. 1 hit.
PF12738. PTCB-BRCT. 1 hit.
[Graphical view]
SMARTSM00292. BRCT. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
PROSITEPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC5YFJ3_SORBI
AccessionPrimary (citable) accession number: C5YFJ3
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 14, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)