C5YFJ3 (C5YFJ3_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein Sb06g027820 EMBL EES12813.1

Gene names

Name:	Sb06g027820 EMBL EES12813.1
ORF Names:	SORBIDRAFT_06g027820 EMBL EES12813.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	1164 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro double-strand break repair Inferred from electronic annotation. Source: EnsemblPlants/Gramene response to X-ray Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5YFJ3 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 0D1771296F8C8BC4	FASTA	1,164	130,901
	10 20 30 40 50 60 MAAKVRFSLL VAMFQAMSGD KSSAKKRSRL RAFLDRAYVP SGGRDDYFSA LRLVLPGLDR 70 80 90 100 110 120 ERGTYGLKEA TLAAVLVDAL GIAKDSADAV RLTNWRRGGG FRNAGNFGLV AAEVLQRRQG 130 140 150 160 170 180 LTSGGLTIKE VNDALDRLAA TENRSEKASI LSNLIKKTNA AEMKWLLMII LKDLKLGISE 190 200 210 220 230 240 KSIFEEFHPD AQDLFNVTCD LKFVCEKLND RSQRHKRQDI EIGKAVRPQL AMRVRDASAA 250 260 270 280 290 300 WKKLHGKQVV AECKFDGDRI QIHKNGEEIH FFSRCILDGE MLVWDTVLNR FAEFGSNQEI 310 320 330 340 350 360 AKAAREGLET DRQRCIDVAF DILYAGDTSV IHQSLTERHQ ILQKVVKPLK GHLEILIPTG 370 380 390 400 410 420 GLNVRRPSDE PCWSIIAHNV EDVERFFKET IENRDEGIIL KDLDSKWEPG DRNGKWLKLK 430 440 450 460 470 480 PDYIHAGADL DVIIIGGYYG SGRRGREVAQ FLVGLAVPSD DNSYPKRFLS FCRVGTGLSD 490 500 510 520 530 540 EERDALVTKL KPYFRKNEYP KKPPKFYEVT NNSKERPDVW IESPDKSVII SVTSDIRTIK 550 560 570 580 590 600 SEVFASPYCL RFPRIQRVRY DKPWHECLDV QAFVDIVHSS NGTTQRVADD NSLKNDDTNR 610 620 630 640 650 660 SRTNKKVEKK KCVSVIPSHL MKTDVSVVEN GGSFSMNLND SVTHCIAAEK KGIKYQAALR 670 680 690 700 710 720 QGRIIHYEWI LDCCKEKHLL RLQPRYILFL ADFARHKFPE EIDSYADYYY WDIEIADLKQ 730 740 750 760 770 780 IFSNIDKVAG DSNMVNQYKK KHCIDERFCF FQGCCVYLHN APLVNADYNV ISDLALKRVK 790 800 810 820 830 840 QDLTMHGGQV CSSIAPATHL VVVSVLQAYN FDNLYKSFPP AERRYLHDKR LHVVSNKWLE 850 860 870 880 890 900 DSVEKQMKLS ETAYSLKPDT LEELEIERSE ENVQPPDHKL EEHREVERSH AKNVPRKRTR 910 920 930 940 950 960 PTSSRTARAA PRPVRRMRPR RGNQKAKIGD DVESEESGPS ECQDDQNLDT DDTSKIEEGI 970 980 990 1000 1010 1020 TSKKKGLPPP ASKPARRTRA ARGNQHTKID DGGSEESGPC ETGQDDQKLD TDYISNMEVD 1030 1040 1050 1060 1070 1080 NSDKDCGPPP GAQLFTLGEQ EAKGVKLNTV EEKPDSPFQR TTAAEAMSSA PGDKIEQMAD 1090 1100 1110 1120 1130 1140 PLHAMLLDML PLLGKKGTED ASRAPLPKAE KDPPAGGSST SNSEILAPDA GTSGVPAPDP 1150 1160 NAAPPPKKKK VSYKDVASEL LKDW

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000765 Genomic DNA. Translation: EES12813.1.
RefSeq	XP_002448485.1. XM_002448440.1.
UniGene	Sbi.794.
3D structure databases
ProteinModelPortal	C5YFJ3.
ModBase	Search...
Protein-protein interaction databases
STRING	4558.Sb06g027820.1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb06g027820.1; Sb06g027820.1; Sb06g027820.
GeneID	8072302.
KEGG	sbi:SORBI_06g027820.
Organism-specific databases
Gramene	C5YFJ3.
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000083793.
KO	K10777.
ProtClustDB	CLSN2680547.
Family and domain databases
Gene3D	1.10.3260.10. 1 hit. 2.40.50.140. 1 hit.
InterPro	IPR001357. BRCT_dom. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 2 hits. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SMART	SM00292. BRCT. 1 hit. [Graphical view]
SUPFAM	SSF52113. BRCT. 2 hits. SSF50249. Nucleic_acid_OB. 1 hit. SSF117018. SSF117018. 1 hit.
PROSITE	PS50172. BRCT. 2 hits. PS00697. DNA_LIGASE_A1. 1 hit. PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C5YFJ3_SORBI

Accession

Primary (citable) accession number: C5YFJ3

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	April 3, 2013
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)