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C5YFJ3

- C5YFJ3_SORBI

UniProt

C5YFJ3 - C5YFJ3_SORBI

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Protein
Submitted name: Putative uncharacterized protein Sb06g027820
Gene
Sb06g027820, SORBIDRAFT_06g027820
Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
  3. double-strand break repair Source: EnsemblPlants/Gramene
  4. response to X-ray Source: EnsemblPlants/Gramene
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized protein Sb06g027820Imported
Gene namesi
Name:Sb06g027820Imported
ORF Names:SORBIDRAFT_06g027820Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
ProteomesiUP000000768: Chromosome 6

Organism-specific databases

GrameneiC5YFJ3.

Subcellular locationi

GO - Cellular componenti

  1. apoplast Source: EnsemblPlants/Gramene
  2. plasmodesma Source: EnsemblPlants/Gramene
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb06g027820.1.

Structurei

3D structure databases

ProteinModelPortaliC5YFJ3.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000083793.
KOiK10777.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProiIPR001357. BRCT_dom.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 2 hits.
PF04675. DNA_ligase_A_N. 1 hit.
PF12738. PTCB-BRCT. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
PROSITEiPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5YFJ3-1 [UniParc]FASTAAdd to Basket

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MAAKVRFSLL VAMFQAMSGD KSSAKKRSRL RAFLDRAYVP SGGRDDYFSA     50
LRLVLPGLDR ERGTYGLKEA TLAAVLVDAL GIAKDSADAV RLTNWRRGGG 100
FRNAGNFGLV AAEVLQRRQG LTSGGLTIKE VNDALDRLAA TENRSEKASI 150
LSNLIKKTNA AEMKWLLMII LKDLKLGISE KSIFEEFHPD AQDLFNVTCD 200
LKFVCEKLND RSQRHKRQDI EIGKAVRPQL AMRVRDASAA WKKLHGKQVV 250
AECKFDGDRI QIHKNGEEIH FFSRCILDGE MLVWDTVLNR FAEFGSNQEI 300
AKAAREGLET DRQRCIDVAF DILYAGDTSV IHQSLTERHQ ILQKVVKPLK 350
GHLEILIPTG GLNVRRPSDE PCWSIIAHNV EDVERFFKET IENRDEGIIL 400
KDLDSKWEPG DRNGKWLKLK PDYIHAGADL DVIIIGGYYG SGRRGREVAQ 450
FLVGLAVPSD DNSYPKRFLS FCRVGTGLSD EERDALVTKL KPYFRKNEYP 500
KKPPKFYEVT NNSKERPDVW IESPDKSVII SVTSDIRTIK SEVFASPYCL 550
RFPRIQRVRY DKPWHECLDV QAFVDIVHSS NGTTQRVADD NSLKNDDTNR 600
SRTNKKVEKK KCVSVIPSHL MKTDVSVVEN GGSFSMNLND SVTHCIAAEK 650
KGIKYQAALR QGRIIHYEWI LDCCKEKHLL RLQPRYILFL ADFARHKFPE 700
EIDSYADYYY WDIEIADLKQ IFSNIDKVAG DSNMVNQYKK KHCIDERFCF 750
FQGCCVYLHN APLVNADYNV ISDLALKRVK QDLTMHGGQV CSSIAPATHL 800
VVVSVLQAYN FDNLYKSFPP AERRYLHDKR LHVVSNKWLE DSVEKQMKLS 850
ETAYSLKPDT LEELEIERSE ENVQPPDHKL EEHREVERSH AKNVPRKRTR 900
PTSSRTARAA PRPVRRMRPR RGNQKAKIGD DVESEESGPS ECQDDQNLDT 950
DDTSKIEEGI TSKKKGLPPP ASKPARRTRA ARGNQHTKID DGGSEESGPC 1000
ETGQDDQKLD TDYISNMEVD NSDKDCGPPP GAQLFTLGEQ EAKGVKLNTV 1050
EEKPDSPFQR TTAAEAMSSA PGDKIEQMAD PLHAMLLDML PLLGKKGTED 1100
ASRAPLPKAE KDPPAGGSST SNSEILAPDA GTSGVPAPDP NAAPPPKKKK 1150
VSYKDVASEL LKDW 1164
Length:1,164
Mass (Da):130,901
Last modified:September 1, 2009 - v1
Checksum:i0D1771296F8C8BC4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000765 Genomic DNA. Translation: EES12813.1.
RefSeqiXP_002448485.1. XM_002448440.1.
UniGeneiSbi.794.

Genome annotation databases

EnsemblPlantsiSb06g027820.1; Sb06g027820.1; Sb06g027820.
GeneIDi8072302.
KEGGisbi:SORBI_06g027820.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000765 Genomic DNA. Translation: EES12813.1 .
RefSeqi XP_002448485.1. XM_002448440.1.
UniGenei Sbi.794.

3D structure databases

ProteinModelPortali C5YFJ3.
ModBasei Search...

Protein-protein interaction databases

STRINGi 4558.Sb06g027820.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi Sb06g027820.1 ; Sb06g027820.1 ; Sb06g027820 .
GeneIDi 8072302.
KEGGi sbi:SORBI_06g027820.

Organism-specific databases

Gramenei C5YFJ3.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000083793.
KOi K10777.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProi IPR001357. BRCT_dom.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 2 hits.
PF04675. DNA_ligase_A_N. 1 hit.
PF12738. PTCB-BRCT. 1 hit.
[Graphical view ]
SMARTi SM00292. BRCT. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
PROSITEi PS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. BTx623.

Entry informationi

Entry nameiC5YFJ3_SORBI
AccessioniPrimary (citable) accession number: C5YFJ3
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 14, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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