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C5YFJ3

- C5YFJ3_SORBI

UniProt

C5YFJ3 - C5YFJ3_SORBI

Protein
Submitted name:

Putative uncharacterized protein Sb06g027820

Gene

Sb06g027820

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 43 (01 Oct 2014)
      Sequence version 1 (01 Sep 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro
    3. double-strand break repair Source: EnsemblPlants/Gramene
    4. response to X-ray Source: EnsemblPlants/Gramene

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative uncharacterized protein Sb06g027820Imported
    Gene namesi
    Name:Sb06g027820Imported
    ORF Names:SORBIDRAFT_06g027820Imported
    OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
    Taxonomic identifieri4558 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
    ProteomesiUP000000768: Chromosome 6

    Organism-specific databases

    GrameneiC5YFJ3.

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: EnsemblPlants/Gramene
    2. plasmodesma Source: EnsemblPlants/Gramene

    Interactioni

    Protein-protein interaction databases

    STRINGi4558.Sb06g027820.1.

    Structurei

    3D structure databases

    ProteinModelPortaliC5YFJ3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000083793.
    KOiK10777.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    3.40.50.10190. 2 hits.
    InterProiIPR001357. BRCT_dom.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 2 hits.
    PF04675. DNA_ligase_A_N. 1 hit.
    PF12738. PTCB-BRCT. 1 hit.
    [Graphical view]
    SMARTiSM00292. BRCT. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    PROSITEiPS50172. BRCT. 2 hits.
    PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C5YFJ3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAAKVRFSLL VAMFQAMSGD KSSAKKRSRL RAFLDRAYVP SGGRDDYFSA     50
    LRLVLPGLDR ERGTYGLKEA TLAAVLVDAL GIAKDSADAV RLTNWRRGGG 100
    FRNAGNFGLV AAEVLQRRQG LTSGGLTIKE VNDALDRLAA TENRSEKASI 150
    LSNLIKKTNA AEMKWLLMII LKDLKLGISE KSIFEEFHPD AQDLFNVTCD 200
    LKFVCEKLND RSQRHKRQDI EIGKAVRPQL AMRVRDASAA WKKLHGKQVV 250
    AECKFDGDRI QIHKNGEEIH FFSRCILDGE MLVWDTVLNR FAEFGSNQEI 300
    AKAAREGLET DRQRCIDVAF DILYAGDTSV IHQSLTERHQ ILQKVVKPLK 350
    GHLEILIPTG GLNVRRPSDE PCWSIIAHNV EDVERFFKET IENRDEGIIL 400
    KDLDSKWEPG DRNGKWLKLK PDYIHAGADL DVIIIGGYYG SGRRGREVAQ 450
    FLVGLAVPSD DNSYPKRFLS FCRVGTGLSD EERDALVTKL KPYFRKNEYP 500
    KKPPKFYEVT NNSKERPDVW IESPDKSVII SVTSDIRTIK SEVFASPYCL 550
    RFPRIQRVRY DKPWHECLDV QAFVDIVHSS NGTTQRVADD NSLKNDDTNR 600
    SRTNKKVEKK KCVSVIPSHL MKTDVSVVEN GGSFSMNLND SVTHCIAAEK 650
    KGIKYQAALR QGRIIHYEWI LDCCKEKHLL RLQPRYILFL ADFARHKFPE 700
    EIDSYADYYY WDIEIADLKQ IFSNIDKVAG DSNMVNQYKK KHCIDERFCF 750
    FQGCCVYLHN APLVNADYNV ISDLALKRVK QDLTMHGGQV CSSIAPATHL 800
    VVVSVLQAYN FDNLYKSFPP AERRYLHDKR LHVVSNKWLE DSVEKQMKLS 850
    ETAYSLKPDT LEELEIERSE ENVQPPDHKL EEHREVERSH AKNVPRKRTR 900
    PTSSRTARAA PRPVRRMRPR RGNQKAKIGD DVESEESGPS ECQDDQNLDT 950
    DDTSKIEEGI TSKKKGLPPP ASKPARRTRA ARGNQHTKID DGGSEESGPC 1000
    ETGQDDQKLD TDYISNMEVD NSDKDCGPPP GAQLFTLGEQ EAKGVKLNTV 1050
    EEKPDSPFQR TTAAEAMSSA PGDKIEQMAD PLHAMLLDML PLLGKKGTED 1100
    ASRAPLPKAE KDPPAGGSST SNSEILAPDA GTSGVPAPDP NAAPPPKKKK 1150
    VSYKDVASEL LKDW 1164
    Length:1,164
    Mass (Da):130,901
    Last modified:September 1, 2009 - v1
    Checksum:i0D1771296F8C8BC4
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000765 Genomic DNA. Translation: EES12813.1.
    RefSeqiXP_002448485.1. XM_002448440.1.
    UniGeneiSbi.794.

    Genome annotation databases

    EnsemblPlantsiSb06g027820.1; Sb06g027820.1; Sb06g027820.
    GeneIDi8072302.
    KEGGisbi:SORBI_06g027820.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000765 Genomic DNA. Translation: EES12813.1 .
    RefSeqi XP_002448485.1. XM_002448440.1.
    UniGenei Sbi.794.

    3D structure databases

    ProteinModelPortali C5YFJ3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 4558.Sb06g027820.1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi Sb06g027820.1 ; Sb06g027820.1 ; Sb06g027820 .
    GeneIDi 8072302.
    KEGGi sbi:SORBI_06g027820.

    Organism-specific databases

    Gramenei C5YFJ3.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000083793.
    KOi K10777.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    3.40.50.10190. 2 hits.
    InterProi IPR001357. BRCT_dom.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 2 hits.
    PF04675. DNA_ligase_A_N. 1 hit.
    PF12738. PTCB-BRCT. 1 hit.
    [Graphical view ]
    SMARTi SM00292. BRCT. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    PROSITEi PS50172. BRCT. 2 hits.
    PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. BTx623Imported.

    Entry informationi

    Entry nameiC5YFJ3_SORBI
    AccessioniPrimary (citable) accession number: C5YFJ3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 1, 2009
    Last sequence update: September 1, 2009
    Last modified: October 1, 2014
    This is version 43 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3