C5YAM1 (C5YAM1_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein Sb06g033230 EMBL EES13117.1

Gene names

Name:	Sb06g033230 EMBL EES13117.1
ORF Names:	SORBIDRAFT_06g033230 EMBL EES13117.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare)

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	334 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 ACB (acyl-CoA-binding) domain. SAAS SAAS014352

Ontologies

Keywords
Domain	ANK repeat RuleBase RU003321 Repeat RuleBase RU003536
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular function	fatty-acyl-CoA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5YAM1 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 3C043EBDC634F599	FASTA	334	35,670
	10 20 30 40 50 60 MAGDWQELGQ AAAIGLLFAY LVAKLISTVI AFKEDNLRIT RSPPSSPTAA APAPATPFPA 70 80 90 100 110 120 EPRLPSHDGS TDGGSASDSD WEGVESTELD EEFSAASAFV AASAASGTSV PEEAQLRLYG 130 140 150 160 170 180 LYKIATEGPC TAPQPSALKL KARAKWNAWH KLGAMPTEEA MQEYITIVQE LFPNWDAGAS 190 200 210 220 230 240 AKRKDEDNMA SASASKGPMG PVFSSLMYEE DEGNDSELGD IHVSAREGAT EDIVKFLAAG 250 260 270 280 290 300 VEVNVRDTEG RTPLHWAVDR GHLSAVEVLA KANADLNAKD NEGQTALHYA AVCEREDIAE 310 320 330 LLVKHHADLQ IKDEDGNTAQ DLCPSSWSFM NQAN

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed: 19189423] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000765 Genomic DNA. Translation: EES13117.1.
RefSeq	XP_002448789.1. XM_002448744.1.
UniGene	Sbi.8992.
3D structure databases
ProteinModelPortal	C5YAM1.
ModBase	Search...
Protein-protein interaction databases
STRING	C5YAM1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb06g033230.1; Sb06g033230.1; Sb06g033230.
GeneID	8076481.
KEGG	sbi:SORBI_06g033230.
Phylogenomic databases
GeneTree	EPGT00050000006949.
OMA	QLQLYGL.
PhylomeDB	C5YAM1.
ProtClustDB	CLSN2685520.
Family and domain databases
InterPro	IPR000582. Acyl-CoA-binding_protein. IPR002110. Ankyrin_rpt. IPR020683. Ankyrin_rpt-contain_dom. IPR014352. FERM/acyl-CoA-bd_prot_3-hlx. [Graphical view]
Gene3D	G3DSA:1.20.80.10. ACBP. 1 hit. G3DSA:1.25.40.20. ANK. 1 hit.
Pfam	PF00887. ACBP. 1 hit. PF12796. Ank_2. 1 hit. [Graphical view]
PRINTS	PR00689. ACOABINDINGP. PR01415. ANKYRIN.
SMART	SM00248. ANK. 2 hits. [Graphical view]
SUPFAM	SSF47027. ACBP. 1 hit. SSF48403. ANK. 1 hit.
PROSITE	PS51228. ACB_2. 1 hit. PS50297. ANK_REP_REGION. 1 hit. PS50088. ANK_REPEAT. 2 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C5YAM1_SORBI

Accession

Primary (citable) accession number: C5YAM1

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	December 14, 2011
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)