C5Y9A8 (C5Y9A8_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein Sb06g018130 EMBL EES10890.1

Gene names

Name:	Sb06g018130 EMBL EES10890.1
ORF Names:	SORBIDRAFT_06g018130 EMBL EES10890.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	508 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	glutamate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	glutamate decarboxylase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5Y9A8 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 60802CBF8B3A10FE	FASTA	508	56,607
	10 20 30 40 50 60 MVLTHVHDLD DAAAASAVVF ASRYVQDPLP RYELGEKSIS KDAAYQIIHD ELLLDSSPRL 70 80 90 100 110 120 NLASFVTTWM EPECDRLILE GINKNYADMD EYPVTTELQN RCVNIIARLF HAPAVGASSD 130 140 150 160 170 180 GKAVGVGTVG SSEAIMLAGL AFKRRWQNRR KAAGKPYDKP NIVTGANVQV CWEKFARYFE 190 200 210 220 230 240 VELKEVKLRE GCYVMDPDEA VRMVDENTIC VAAILGSTLT GEFEDVKMLN DLLAAKNAET 250 260 270 280 290 300 GWDTPIHVDA ASGGFIAPFL YPELEWDFRL PLVKSINVSG HKYGLVYAGV GWVIWRSKED 310 320 330 340 350 360 LPEDLIFHIN YLGADQPTFT LNFSKGSSQI IAQYYQFLRL GFEGYRNVME NCMESAQTLR 370 380 390 400 410 420 EGLEQMGRFT IISKEQGVPL VAFTFKSKDE TSLAFKLSSE LRRYGWIVPA YTMPANLEHM 430 440 450 460 470 480 AVLRVVVWED FGRPLAERFL SHVRMALEEL DHAAKGGPVP RMRVTIELGP PDRGSGEEAS 490 500 ARVVKREAVV VPVHRSVSLS GGKTKGVC

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000765 Genomic DNA. Translation: EES10890.1.
RefSeq	XP_002446562.1. XM_002446517.1.
3D structure databases
ProteinModelPortal	C5Y9A8.
ModBase	Search...
Protein-protein interaction databases
STRING	4558.Sb06g018130.1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb06g018130.1; Sb06g018130.1; Sb06g018130.
GeneID	8073378.
KEGG	sbi:SORBI_06g018130.
Organism-specific databases
Gramene	C5Y9A8.
Phylogenomic databases
eggNOG	COG0076.
HOGENOM	HOG000070228.
KO	K01580.
ProtClustDB	CLSN2683665.
Family and domain databases
Gene3D	3.40.640.10. 1 hit.
InterPro	IPR010107. Glutamate_decarboxylase. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. [Graphical view]
PANTHER	PTHR11999:SF1. PTHR11999:SF1. 1 hit.
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C5Y9A8_SORBI

Accession

Primary (citable) accession number: C5Y9A8

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	April 3, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)