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C5Y9A0

- C5Y9A0_SORBI

UniProt

C5Y9A0 - C5Y9A0_SORBI

Protein

Glutamate decarboxylase

Gene

Sb06g018050

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 32 (01 Oct 2014)
      Sequence version 1 (01 Sep 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

    Cofactori

    Pyridoxal phosphate.UniRule annotation

    GO - Molecular functioni

    1. glutamate decarboxylase activity Source: InterPro
    2. pyridoxal phosphate binding Source: InterPro

    GO - Biological processi

    1. glutamate metabolic process Source: InterPro

    Keywords - Molecular functioni

    DecarboxylaseUniRule annotation, Lyase

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
    Gene namesi
    Name:Sb06g018050Imported
    ORF Names:SORBIDRAFT_06g018050Imported
    OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
    Taxonomic identifieri4558 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
    ProteomesiUP000000768: Chromosome 6

    Organism-specific databases

    GrameneiC5Y9A0.

    Interactioni

    Protein-protein interaction databases

    STRINGi4558.Sb06g018050.1.

    Structurei

    3D structure databases

    ProteinModelPortaliC5Y9A0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the group II decarboxylase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0076.
    HOGENOMiHOG000070228.
    KOiK01580.
    OMAiNCRDNAT.

    Family and domain databases

    Gene3Di3.40.640.10. 1 hit.
    InterProiIPR010107. Glutamate_decarboxylase.
    IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    [Graphical view]
    PfamiPF00282. Pyridoxal_deC. 1 hit.
    [Graphical view]
    SUPFAMiSSF53383. SSF53383. 1 hit.
    TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    C5Y9A0-1 [UniParc]FASTAAdd to Basket

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    MALSTANTNA AESHLHCSTF ASRYVRTALP RFKMPEQSIP KEAAYQIIND    50
    ELMLDGNPRL NLASFVTTWM EPECDKLIQS SINKNYVDMD EYPVTTELQN 100
    RCVNMIAHLF NAPIGDDETA VGVGTVGSSE AIMLAGLAFK RKWQNKMKAA 150
    GKPYDKPNIV TGANVQVCWE KFARYFEVEL KEVKLREGYY VMDPEKAAEM 200
    VDENTICVAA ILGSTLNGEF EDVKMLNDLL AAKNAETGWD TPIHVDAASG 250
    GFIAPFIYPE LEWDFRLPLV KSINVSGHKY GLVYAGVGWV IWRSKDDLPD 300
    ELIFHINYLG ADQPTFTLNF SKGSSQIIAQ YYQLIRLGFE GYKDVMQNCR 350
    DNATVLREGI EKMGYFDVVS KDSGVPLVAF SLKDSSKYTV FEVAESLRRF 400
    GWIVPAYTMP ADAEHVAVMR VVIREDFSRG LAERLIADLG KTMADMDAHA 450
    GKKAPDHPKK SVHDIEKEVT TFWRRLVANN KKKSSMVC 488
    Length:488
    Mass (Da):54,742
    Last modified:September 1, 2009 - v1
    Checksum:i1AE4A3CA8F7209EB
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000765 Genomic DNA. Translation: EES12248.1.
    RefSeqiXP_002447920.1. XM_002447875.1.
    UniGeneiSbi.5699.

    Genome annotation databases

    EnsemblPlantsiSb06g018050.1; Sb06g018050.1; Sb06g018050.
    GeneIDi8065836.
    KEGGisbi:SORBI_06g018050.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000765 Genomic DNA. Translation: EES12248.1 .
    RefSeqi XP_002447920.1. XM_002447875.1.
    UniGenei Sbi.5699.

    3D structure databases

    ProteinModelPortali C5Y9A0.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 4558.Sb06g018050.1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi Sb06g018050.1 ; Sb06g018050.1 ; Sb06g018050 .
    GeneIDi 8065836.
    KEGGi sbi:SORBI_06g018050.

    Organism-specific databases

    Gramenei C5Y9A0.

    Phylogenomic databases

    eggNOGi COG0076.
    HOGENOMi HOG000070228.
    KOi K01580.
    OMAi NCRDNAT.

    Family and domain databases

    Gene3Di 3.40.640.10. 1 hit.
    InterProi IPR010107. Glutamate_decarboxylase.
    IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    [Graphical view ]
    Pfami PF00282. Pyridoxal_deC. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53383. SSF53383. 1 hit.
    TIGRFAMsi TIGR01788. Glu-decarb-GAD. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. BTx623Imported.

    Entry informationi

    Entry nameiC5Y9A0_SORBI
    AccessioniPrimary (citable) accession number: C5Y9A0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 1, 2009
    Last sequence update: September 1, 2009
    Last modified: October 1, 2014
    This is version 32 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3