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Protein

Glutamate decarboxylase

Gene

Sb06g018050

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
Name:Sb06g018050Imported
ORF Names:SORBIDRAFT_06g018050Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
ProteomesiUP000000768 Componenti: Chromosome 6

Organism-specific databases

GrameneiC5Y9A0.

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb06g018050.1.

Structurei

3D structure databases

ProteinModelPortaliC5Y9A0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000070228.
InParanoidiC5Y9A0.
KOiK01580.
OMAiDPDLVWD.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

C5Y9A0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALSTANTNA AESHLHCSTF ASRYVRTALP RFKMPEQSIP KEAAYQIIND
60 70 80 90 100
ELMLDGNPRL NLASFVTTWM EPECDKLIQS SINKNYVDMD EYPVTTELQN
110 120 130 140 150
RCVNMIAHLF NAPIGDDETA VGVGTVGSSE AIMLAGLAFK RKWQNKMKAA
160 170 180 190 200
GKPYDKPNIV TGANVQVCWE KFARYFEVEL KEVKLREGYY VMDPEKAAEM
210 220 230 240 250
VDENTICVAA ILGSTLNGEF EDVKMLNDLL AAKNAETGWD TPIHVDAASG
260 270 280 290 300
GFIAPFIYPE LEWDFRLPLV KSINVSGHKY GLVYAGVGWV IWRSKDDLPD
310 320 330 340 350
ELIFHINYLG ADQPTFTLNF SKGSSQIIAQ YYQLIRLGFE GYKDVMQNCR
360 370 380 390 400
DNATVLREGI EKMGYFDVVS KDSGVPLVAF SLKDSSKYTV FEVAESLRRF
410 420 430 440 450
GWIVPAYTMP ADAEHVAVMR VVIREDFSRG LAERLIADLG KTMADMDAHA
460 470 480
GKKAPDHPKK SVHDIEKEVT TFWRRLVANN KKKSSMVC
Length:488
Mass (Da):54,742
Last modified:September 1, 2009 - v1
Checksum:i1AE4A3CA8F7209EB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000765 Genomic DNA. Translation: EES12248.1.
RefSeqiXP_002447920.1. XM_002447875.1.
UniGeneiSbi.5699.

Genome annotation databases

EnsemblPlantsiSb06g018050.1; Sb06g018050.1; Sb06g018050.
GeneIDi8065836.
KEGGisbi:SORBI_06g018050.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000765 Genomic DNA. Translation: EES12248.1.
RefSeqiXP_002447920.1. XM_002447875.1.
UniGeneiSbi.5699.

3D structure databases

ProteinModelPortaliC5Y9A0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4558.Sb06g018050.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiSb06g018050.1; Sb06g018050.1; Sb06g018050.
GeneIDi8065836.
KEGGisbi:SORBI_06g018050.

Organism-specific databases

GrameneiC5Y9A0.

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000070228.
InParanoidiC5Y9A0.
KOiK01580.
OMAiDPDLVWD.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. BTx623Imported.

Entry informationi

Entry nameiC5Y9A0_SORBI
AccessioniPrimary (citable) accession number: C5Y9A0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: February 4, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.