C5Y7M9 (C5Y7M9_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Histone H2A RuleBase RU000527

Gene names

Name:	Sb05g006690 EMBL EES08228.1
ORF Names:	SORBIDRAFT_05g006690 EMBL EES08228.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	132 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Subunit structure	The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA By similarity.
Subcellular location	Nucleus By similarity RuleBase RU000527.
Sequence similarities	Belongs to the histone H2A family. RuleBase RU003767

Ontologies

Keywords
Cellular component	Chromosome Nucleosome core RuleBase RU000527 SAAS SAAS002119 Nucleus RuleBase RU000527 SAAS SAAS002119
Ligand	DNA-binding
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	nucleosome assembly Inferred from electronic annotation. Source: InterPro
Cellular_component	nucleosome Inferred from electronic annotation. Source: UniProtKB-KW nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5Y7M9 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: DAAE426441DDB004	FASTA	132	14,550
	10 20 30 40 50 60 MSAPRPQRPH LMLTLLPLRP RDTFALGASA IIYTAAILEY LTAKVLEMAS NARRDLKAKS 70 80 90 100 110 120 FTPWHQHLAN RRNEELDTLI KGTIASGDVI PHIHKLAIHG NTELETVIKG TIVGGGIIPH 130 IHKSLINKSA KE

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000764 Genomic DNA. Translation: EES08228.1.
RefSeq	XP_002449240.1. XM_002449195.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb05g006690.1; Sb05g006690.1; Sb05g006690.
GeneID	8076808.
KEGG	sbi:SORBI_05g006690.
Organism-specific databases
Gramene	C5Y7M9.
Phylogenomic databases
eggNOG	COG5262.
HOGENOM	HOG000234652.
Family and domain databases
Gene3D	1.10.20.10. 2 hits.
InterPro	IPR009072. Histone-fold. IPR007125. Histone_core_D. IPR002119. Histone_H2A. [Graphical view]
Pfam	PF00125. Histone. 1 hit. [Graphical view]
PRINTS	PR00620. HISTONEH2A.
SMART	SM00414. H2A. 1 hit. [Graphical view]
SUPFAM	SSF47113. Histone-fold. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C5Y7M9_SORBI

Accession

Primary (citable) accession number: C5Y7M9

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	March 6, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)