C5Y6R9 (C5Y6R9_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein Sb05g005960 EMBL EES08156.1

Gene names

Name:	Sb05g005960 EMBL EES08156.1
Synonyms:	secA, secA2
ORF Names:	SORBIDRAFT_05g005960 EMBL EES08156.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	1093 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the SecA family. RuleBase RU003874

Ontologies

Keywords
Biological process	Protein transport Translocation RuleBase RU003874 Transport
Ligand	ATP-binding RuleBase RU003874 Nucleotide-binding
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	embryo development Inferred from electronic annotation. Source: EnsemblPlants/Gramene protein import Inferred from electronic annotation. Source: InterPro protein targeting Inferred from electronic annotation. Source: InterPro
Cellular_component	membrane Inferred from electronic annotation. Source: InterPro plastid Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5Y6R9 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: EA63A6CB5DE367D3	FASTA	1,093	121,939
	10 20 30 40 50 60 MAAASAGGSL STASASLVPT PTSAPAPRLL SRRSTKPTTR ASPTPRPKKP PPLSCAAAAT 70 80 90 100 110 120 PTPAPAVASK SAGSWRDLCS LNAWVVRDYR RLVDSVGALE PALRRLSDEQ LKAKTAEFRS 130 140 150 160 170 180 RLTRGETLAD VQAEAFAVVR EAARRTLGMR HFDVQIIGGA VLNDGCIAEM KTGEGKTLVS 190 200 210 220 230 240 TLAAYLNALT GEGVHVVTVN DYLAQRDAEW MGRVHRFLGL TVGLVQAGMK SDERRASYRC 250 260 270 280 290 300 DITYTNNSVR GTTFSGDNLF SKAAHPMQEL GFDYLRDNLS RNKEQLVMRW PKPFHFAIVD 310 320 330 340 350 360 EVDSVLIDEG RNPLLISGED NRDAARYPIA AKVAELLVEG VHYTVELKGN NIDLTEDGVA 370 380 390 400 410 420 HAEIILGTDD LWDENDPWAR FVMNALKAKV FYRRDVQYIV RDGKAIIINE LTGRVEPKRR 430 440 450 460 470 480 WSDGIHQAVE AKEGLKIQAD SVIVAQITYQ SLFKLYPKLS GMTGTAKTEE KEFLKMFKMP 490 500 510 520 530 540 VIEVPTNLPN IRVDLPIQAF ATARGKWQYV RAEVESMFQL GRPVLVGTTS VESSEYLSEL 550 560 570 580 590 600 LKLRNIPHNV LNARPKYAAR EAEIIAQAGR KHAITISTNM AGRGTDIILG GNPKKYGPSF 610 620 630 640 650 660 CCQMLAKEIV EDNILPFLSH EPPDIDMEGE STSHKGLSNI ELGPSSVGLL AKAAIMSKYI 670 680 690 700 710 720 HKSEINEWSF SKAKSTIAES IEMGQMIGME KLQEHMTEES EMYPLCDAIG LAYLSVLRDC 730 740 750 760 770 780 EIHCSAEGAA VKRLGGLHVV GTSLHESRRI DNQLCGRAGR QGDPGSTRFM VSLQDEIFQK 790 800 810 820 830 840 FNLDTEWAVR LISRITNDED IAIESNVVVK QLLGLQINAE KYYFGIRKSL VEFDEVLEVQ 850 860 870 880 890 900 RKHVYNLRQV ILSGDSESCS EQIFQYMQAV ADEIVLLNID PQKPPKAWNL VKLLDEFVRL 910 920 930 940 950 960 GGKLLSESFE DIQEENLQSA LEEMQGWDPV KADSFALPNM PVPPDSLRGI RKKTSSIMRW 970 980 990 1000 1010 1020 FAICVDDTSK KGRYTNTVNL LRKYFGDFLI ATYLNAVQES RYDDGYISGI EREVLLKTLD 1030 1040 1050 1060 1070 1080 TLWKDHLVNM NKLSSAVNVR SFGHRNPLEE YKIDGCRFFI SMLSATRRLT VESLLHYWSS 1090 PMESEEIFNT EDQ

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000764 Genomic DNA. Translation: EES08156.1.
RefSeq	XP_002449168.1. XM_002449123.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	4558.Sb05g005960.1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb05g005960.1; Sb05g005960.1; Sb05g005960.
GeneID	8074328.
KEGG	sbi:SORBI_05g005960.
Organism-specific databases
Gramene	C5Y6R9.
Phylogenomic databases
eggNOG	COG0653.
HOGENOM	HOG000218168.
KO	K03070.
OMA	STRFMVS.
ProtClustDB	CLSN2698462.
Family and domain databases
Gene3D	1.10.3060.10. 2 hits. 3.90.1440.10. 1 hit.
HAMAP	MF_01382. SecA.
InterPro	IPR000185. SecA. IPR020937. SecA_CS. IPR011115. SecA_DEAD. IPR014018. SecA_motor_DEAD. IPR011130. SecA_preprotein_X-link_dom. IPR011116. SecA_Wing/Scaffold. [Graphical view]
Pfam	PF07517. SecA_DEAD. 1 hit. PF01043. SecA_PP_bind. 1 hit. PF07516. SecA_SW. 1 hit. [Graphical view]
PRINTS	PR00906. SECA.
SMART	SM00957. SecA_DEAD. 1 hit. SM00958. SecA_PP_bind. 1 hit. [Graphical view]
SUPFAM	SSF81767. SecA_PP_bd. 1 hit. SSF81886. SecA_SW. 1 hit.
PROSITE	PS01312. SECA. 1 hit. PS51196. SECA_MOTOR_DEAD. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C5Y6R9_SORBI

Accession

Primary (citable) accession number: C5Y6R9

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	April 3, 2013
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)