C5Y519 (C5Y519_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribulose bisphosphate carboxylase small chain RuleBase RU003627
EC=4.1.1.39 RuleBase RU003627

Gene names

Name:	Sb05g003480 EMBL EES09292.1
ORF Names:	SORBIDRAFT_05g003480 EMBL EES09292.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	169 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site By similarity. RuleBase RU003627 SAAS SAAS000894
Catalytic activity	2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O. RuleBase RU003627 SAAS SAAS000894 3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2. RuleBase RU003627 SAAS SAAS000894
Subunit structure	8 large chains + 8 small chains By similarity. RuleBase RU003627 SAAS SAAS000894
Sequence similarities	Belongs to the RuBisCO small chain family. RuleBase RU003627

Ontologies

Keywords
Biological process	Carbon dioxide fixation RuleBase RU003627 SAAS SAAS000894 Photorespiration RuleBase RU003627 SAAS SAAS000894 Photosynthesis RuleBase RU003627 SAAS SAAS000894
Cellular component	Chloroplast SAAS SAAS000894 Plastid
Molecular function	Lyase RuleBase RU003627 SAAS SAAS000894 Monooxygenase RuleBase RU003627 SAAS SAAS000894 Oxidoreductase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	carbon fixation Inferred from electronic annotation. Source: UniProtKB-KW photorespiration Inferred from electronic annotation. Source: UniProtKB-KW photosynthesis Inferred from electronic annotation. Source: UniProtKB-KW response to blue light Inferred from electronic annotation. Source: EnsemblPlants/Gramene response to cold Inferred from electronic annotation. Source: EnsemblPlants/Gramene response to far red light Inferred from electronic annotation. Source: EnsemblPlants/Gramene response to red light Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Cellular_component	apoplast Inferred from electronic annotation. Source: EnsemblPlants/Gramene cell wall Inferred from electronic annotation. Source: EnsemblPlants/Gramene chloroplast envelope Inferred from electronic annotation. Source: EnsemblPlants/Gramene chloroplast stroma Inferred from electronic annotation. Source: EnsemblPlants/Gramene chloroplast thylakoid membrane Inferred from electronic annotation. Source: EnsemblPlants/Gramene cytosolic ribosome Inferred from electronic annotation. Source: EnsemblPlants/Gramene thylakoid lumen Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Molecular_function	copper ion binding Inferred from electronic annotation. Source: EnsemblPlants/Gramene monooxygenase activity Inferred from electronic annotation. Source: UniProtKB-KW ribulose-bisphosphate carboxylase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5Y519 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 0DCE3CBA88F012BC	FASTA	169	19,059
	10 20 30 40 50 60 MAPTVMASSA TAVAPFQGLK STATLPVARR STTSLAKVSN GGRIRCMQVW PAYGNKKFET 70 80 90 100 110 120 LSYLPPLTEE QLLKQVDYLL RNNWVPCLEF SKEGFVYREN STSPCYYDGR YWTMWKLPMF 130 140 150 160 GCTDASQVYK ELQEAIASYP DAYVRILGFD NIKQTQCVSF IAYKPAGSE

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000764 Genomic DNA. Translation: EES09292.1.
RefSeq	XP_002450304.1. XM_002450259.1.
UniGene	Sbi.17768.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	4558.Sb05g003480.1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb05g003480.1; Sb05g003480.1; Sb05g003480.
GeneID	8070647.
KEGG	sbi:SORBI_05g003480.
Organism-specific databases
Gramene	C5Y519.
Phylogenomic databases
eggNOG	COG4451.
HOGENOM	HOG000141332.
KO	K01602.
OMA	APTVMAS.
ProtClustDB	PLN02289.
Family and domain databases
Gene3D	3.30.190.10. 1 hit.
InterPro	IPR024681. RuBisCO_sc. IPR000894. RuBisCO_sc_dom. IPR024680. RuBisCO_ssu_N. [Graphical view]
Pfam	PF12338. RbcS. 1 hit. PF00101. RuBisCO_small. 1 hit. [Graphical view]
PRINTS	PR00152. RUBISCOSMALL.
SUPFAM	SSF55239. RuBisCO_small. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C5Y519_SORBI

Accession

Primary (citable) accession number: C5Y519

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	April 3, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)