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C5Y519

- C5Y519_SORBI

UniProt

C5Y519 - C5Y519_SORBI

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Protein
Ribulose bisphosphate carboxylase small chain
Gene
Sb05g003480, SORBIDRAFT_05g003480
Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 4 out of 5 - Protein inferred from homologyi

Functioni

RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site By similarity.UniRule annotationSAAS annotations

Catalytic activityi

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.UniRule annotationSAAS annotations
3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.UniRule annotationSAAS annotations

GO - Molecular functioni

  1. copper ion binding Source: EnsemblPlants/Gramene
  2. monooxygenase activity Source: UniProtKB-KW
  3. ribulose-bisphosphate carboxylase activity Source: UniProtKB-EC

GO - Biological processi

  1. carbon fixation Source: UniProtKB-KW
  2. chloroplast ribulose bisphosphate carboxylase complex biogenesis Source: EnsemblPlants/Gramene
  3. photorespiration Source: UniProtKB-KW
  4. photosynthesis Source: UniProtKB-KW
  5. response to blue light Source: EnsemblPlants/Gramene
  6. response to cold Source: EnsemblPlants/Gramene
  7. response to far red light Source: EnsemblPlants/Gramene
  8. response to red light Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationSAAS annotations, MonooxygenaseUniRule annotationSAAS annotations, Oxidoreductase

Keywords - Biological processi

Carbon dioxide fixationUniRule annotationSAAS annotations, PhotorespirationUniRule annotationSAAS annotations, PhotosynthesisUniRule annotationSAAS annotations

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase small chainUniRule annotation (EC:4.1.1.39UniRule annotation)
Gene namesi
Name:Sb05g003480Imported
ORF Names:SORBIDRAFT_05g003480Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
ProteomesiUP000000768: Chromosome 5

Organism-specific databases

GrameneiC5Y519.

Subcellular locationi

GO - Cellular componenti

  1. apoplast Source: EnsemblPlants/Gramene
  2. cell wall Source: EnsemblPlants/Gramene
  3. chloroplast envelope Source: EnsemblPlants/Gramene
  4. chloroplast stroma Source: EnsemblPlants/Gramene
  5. chloroplast thylakoid membrane Source: EnsemblPlants/Gramene
  6. cytosolic ribosome Source: EnsemblPlants/Gramene
  7. thylakoid lumen Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Cellular componenti

ChloroplastSAAS annotations, Plastid

Interactioni

Subunit structurei

8 large chains + 8 small chains By similarity.UniRule annotationSAAS annotations

Protein-protein interaction databases

STRINGi4558.Sb05g003480.1.

Family & Domainsi

Sequence similaritiesi

Belongs to the RuBisCO small chain family.UniRule annotation

Phylogenomic databases

eggNOGiCOG4451.
HOGENOMiHOG000141332.
KOiK01602.
OMAiAFPATRK.

Family and domain databases

Gene3Di3.30.190.10. 1 hit.
InterProiIPR024681. RuBisCO_sc.
IPR000894. RuBisCO_sc_dom.
IPR024680. RuBisCO_ssu_N.
[Graphical view]
PfamiPF12338. RbcS. 1 hit.
PF00101. RuBisCO_small. 1 hit.
[Graphical view]
PRINTSiPR00152. RUBISCOSMALL.
SUPFAMiSSF55239. SSF55239. 1 hit.

Sequencei

Sequence statusi: Complete.

C5Y519-1 [UniParc]FASTAAdd to Basket

« Hide

MAPTVMASSA TAVAPFQGLK STATLPVARR STTSLAKVSN GGRIRCMQVW    50
PAYGNKKFET LSYLPPLTEE QLLKQVDYLL RNNWVPCLEF SKEGFVYREN 100
STSPCYYDGR YWTMWKLPMF GCTDASQVYK ELQEAIASYP DAYVRILGFD 150
NIKQTQCVSF IAYKPAGSE 169
Length:169
Mass (Da):19,059
Last modified:September 1, 2009 - v1
Checksum:i0DCE3CBA88F012BC
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000764 Genomic DNA. Translation: EES09292.1.
RefSeqiXP_002450304.1. XM_002450259.1.
UniGeneiSbi.17768.

Genome annotation databases

EnsemblPlantsiSb05g003480.1; Sb05g003480.1; Sb05g003480.
GeneIDi8070647.
KEGGisbi:SORBI_05g003480.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000764 Genomic DNA. Translation: EES09292.1 .
RefSeqi XP_002450304.1. XM_002450259.1.
UniGenei Sbi.17768.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 4558.Sb05g003480.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi Sb05g003480.1 ; Sb05g003480.1 ; Sb05g003480 .
GeneIDi 8070647.
KEGGi sbi:SORBI_05g003480.

Organism-specific databases

Gramenei C5Y519.

Phylogenomic databases

eggNOGi COG4451.
HOGENOMi HOG000141332.
KOi K01602.
OMAi AFPATRK.

Family and domain databases

Gene3Di 3.30.190.10. 1 hit.
InterProi IPR024681. RuBisCO_sc.
IPR000894. RuBisCO_sc_dom.
IPR024680. RuBisCO_ssu_N.
[Graphical view ]
Pfami PF12338. RbcS. 1 hit.
PF00101. RuBisCO_small. 1 hit.
[Graphical view ]
PRINTSi PR00152. RUBISCOSMALL.
SUPFAMi SSF55239. SSF55239. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. BTx623.

Entry informationi

Entry nameiC5Y519_SORBI
AccessioniPrimary (citable) accession number: C5Y519
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 14, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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