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Protein

Histone deacetylase

Gene

Sb04g007470

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone.UniRule annotation

GO - Molecular functioni

  1. NAD-dependent histone deacetylase activity (H3-K14 specific) Source: UniProtKB-EC
  2. NAD-dependent histone deacetylase activity (H3-K18 specific) Source: UniProtKB-EC
  3. NAD-dependent histone deacetylase activity (H3-K9 specific) Source: UniProtKB-EC
  4. NAD-dependent histone deacetylase activity (H4-K16 specific) Source: UniProtKB-EC

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Chromatin regulatorUniRule annotation, HydrolaseUniRule annotationSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Histone deacetylaseUniRule annotation (EC:3.5.1.98UniRule annotation)
Gene namesi
Name:Sb04g007470Imported
ORF Names:SORBIDRAFT_04g007470Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
ProteomesiUP000000768: Chromosome 4

Organism-specific databases

GrameneiC5XY14.

Subcellular locationi

Nucleus UniRule annotation

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb04g007470.1.

Structurei

3D structure databases

ProteinModelPortaliC5XY14.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the histone deacetylase family. HD Type 1 subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0123.
HOGENOMiHOG000225180.
InParanoidiC5XY14.
KOiK06067.
OMAiMDTSKPK.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSiPR01270. HDASUPER.
PR01271. HISDACETLASE.

Sequencei

Sequence statusi: Complete.

C5XY14-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDPSSAGSGG NSLPSVGADG QKRRVCYFYD SDVGNYYYGQ GHPMKPHRIR
60 70 80 90 100
MTHSLLARYG LLNQMQVYRP NPARDRDLCR FHADDYINFL RSVTPETQQD
110 120 130 140 150
QIRLLKRFNV GEDCPVFDGL YSFCQTYAGA SVGGAVKLNH GHDIAINWSG
160 170 180 190 200
GLHHAKKCEA SGFCYVNDIV LAILELLKHH ERVLYVDIDI HHGDGVEEAF
210 220 230 240 250
YTTDRVMTVS FHKFGDYFPG TGDIRDIGHS KGKYYSLNVP LDDGIDDESY
260 270 280 290 300
QSLFKPIMGK VMEVFRPGAV VLQCGADSLS GDRLGCFNLS IRGHAECVRY
310 320 330 340 350
MRSFNVPLLL LGGGGYTIRN VARCWCYETG VALGQELEDK MPVNEYYEYF
360 370 380 390 400
GPDYTLHVAP SNMENKNTRN QLDDIRSKLL DNLSKLRHAP SVQFQERVPD
410 420 430 440 450
TEVPEPDEDQ DDPDERHDPD SDMEVDDHKA VEESARRSIP GIKVKREFGE
460 470 480 490 500
NETKVQDGGR IASDHRGVEP MAEDIGSSKQ APQADASAMA VDEPSNVKNE
510
PESSTKLQDQ AAAYHKP
Length:517
Mass (Da):57,885
Last modified:September 1, 2009 - v1
Checksum:iB61250EA8BC725EF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000763 Genomic DNA. Translation: EES04741.1.
RefSeqiXP_002451765.1. XM_002451720.1.
UniGeneiSbi.15980.

Genome annotation databases

EnsemblPlantsiSb04g007470.1; Sb04g007470.1; Sb04g007470.
GeneIDi8082952.
KEGGisbi:SORBI_04g007470.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000763 Genomic DNA. Translation: EES04741.1.
RefSeqiXP_002451765.1. XM_002451720.1.
UniGeneiSbi.15980.

3D structure databases

ProteinModelPortaliC5XY14.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4558.Sb04g007470.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiSb04g007470.1; Sb04g007470.1; Sb04g007470.
GeneIDi8082952.
KEGGisbi:SORBI_04g007470.

Organism-specific databases

GrameneiC5XY14.

Phylogenomic databases

eggNOGiCOG0123.
HOGENOMiHOG000225180.
InParanoidiC5XY14.
KOiK06067.
OMAiMDTSKPK.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSiPR01270. HDASUPER.
PR01271. HISDACETLASE.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. BTx623Imported.

Entry informationi

Entry nameiC5XY14_SORBI
AccessioniPrimary (citable) accession number: C5XY14
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: March 4, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.