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C5XY14

- C5XY14_SORBI

UniProt

C5XY14 - C5XY14_SORBI

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Protein
Histone deacetylase
Gene
Sb04g007470, SORBIDRAFT_04g007470
Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone.UniRule annotation

GO - Molecular functioni

  1. NAD-dependent histone deacetylase activity (H3-K14 specific) Source: UniProtKB-EC
  2. NAD-dependent histone deacetylase activity (H3-K18 specific) Source: UniProtKB-EC
  3. NAD-dependent histone deacetylase activity (H3-K9 specific) Source: UniProtKB-EC
  4. NAD-dependent histone deacetylase activity (H4-K16 specific) Source: UniProtKB-EC

GO - Biological processi

  1. DNA mediated transformation Source: EnsemblPlants/Gramene
  2. histone acetylation Source: EnsemblPlants/Gramene
  3. jasmonic acid and ethylene-dependent systemic resistance Source: EnsemblPlants/Gramene
  4. negative regulation of transcription, DNA-templated Source: EnsemblPlants/Gramene
  5. pathogenesis Source: EnsemblPlants/Gramene
  6. regulation of multicellular organismal development Source: EnsemblPlants/Gramene
  7. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Chromatin regulatorUniRule annotation, HydrolaseUniRule annotationSAAS annotations

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Histone deacetylaseUniRule annotation (EC:3.5.1.98UniRule annotation)
Gene namesi
Name:Sb04g007470Imported
ORF Names:SORBIDRAFT_04g007470Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
ProteomesiUP000000768: Chromosome 4

Organism-specific databases

GrameneiC5XY14.

Subcellular locationi

Nucleus By similarity UniRule annotation

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb04g007470.1.

Structurei

3D structure databases

ProteinModelPortaliC5XY14.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0123.
HOGENOMiHOG000225180.
KOiK06067.
OMAiVSIRAHD.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSiPR01270. HDASUPER.
PR01271. HISDACETLASE.

Sequencei

Sequence statusi: Complete.

C5XY14-1 [UniParc]FASTAAdd to Basket

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MDPSSAGSGG NSLPSVGADG QKRRVCYFYD SDVGNYYYGQ GHPMKPHRIR    50
MTHSLLARYG LLNQMQVYRP NPARDRDLCR FHADDYINFL RSVTPETQQD 100
QIRLLKRFNV GEDCPVFDGL YSFCQTYAGA SVGGAVKLNH GHDIAINWSG 150
GLHHAKKCEA SGFCYVNDIV LAILELLKHH ERVLYVDIDI HHGDGVEEAF 200
YTTDRVMTVS FHKFGDYFPG TGDIRDIGHS KGKYYSLNVP LDDGIDDESY 250
QSLFKPIMGK VMEVFRPGAV VLQCGADSLS GDRLGCFNLS IRGHAECVRY 300
MRSFNVPLLL LGGGGYTIRN VARCWCYETG VALGQELEDK MPVNEYYEYF 350
GPDYTLHVAP SNMENKNTRN QLDDIRSKLL DNLSKLRHAP SVQFQERVPD 400
TEVPEPDEDQ DDPDERHDPD SDMEVDDHKA VEESARRSIP GIKVKREFGE 450
NETKVQDGGR IASDHRGVEP MAEDIGSSKQ APQADASAMA VDEPSNVKNE 500
PESSTKLQDQ AAAYHKP 517
Length:517
Mass (Da):57,885
Last modified:September 1, 2009 - v1
Checksum:iB61250EA8BC725EF
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000763 Genomic DNA. Translation: EES04741.1.
RefSeqiXP_002451765.1. XM_002451720.1.
UniGeneiSbi.15980.

Genome annotation databases

EnsemblPlantsiSb04g007470.1; Sb04g007470.1; Sb04g007470.
GeneIDi8082952.
KEGGisbi:SORBI_04g007470.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000763 Genomic DNA. Translation: EES04741.1 .
RefSeqi XP_002451765.1. XM_002451720.1.
UniGenei Sbi.15980.

3D structure databases

ProteinModelPortali C5XY14.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 4558.Sb04g007470.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi Sb04g007470.1 ; Sb04g007470.1 ; Sb04g007470 .
GeneIDi 8082952.
KEGGi sbi:SORBI_04g007470.

Organism-specific databases

Gramenei C5XY14.

Phylogenomic databases

eggNOGi COG0123.
HOGENOMi HOG000225180.
KOi K06067.
OMAi VSIRAHD.

Family and domain databases

Gene3Di 3.40.800.20. 1 hit.
InterProi IPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view ]
PANTHERi PTHR10625. PTHR10625. 1 hit.
Pfami PF00850. Hist_deacetyl. 1 hit.
[Graphical view ]
PIRSFi PIRSF037913. His_deacetylse_1. 1 hit.
PRINTSi PR01270. HDASUPER.
PR01271. HISDACETLASE.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. BTx623.

Entry informationi

Entry nameiC5XY14_SORBI
AccessioniPrimary (citable) accession number: C5XY14
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 14, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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