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C5XY14

- C5XY14_SORBI

UniProt

C5XY14 - C5XY14_SORBI

Protein

Histone deacetylase

Gene

Sb04g007470

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 33 (01 Oct 2014)
      Sequence version 1 (01 Sep 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone.UniRule annotation

    GO - Molecular functioni

    1. NAD-dependent histone deacetylase activity (H3-K14 specific) Source: UniProtKB-EC
    2. NAD-dependent histone deacetylase activity (H3-K18 specific) Source: UniProtKB-EC
    3. NAD-dependent histone deacetylase activity (H3-K9 specific) Source: UniProtKB-EC
    4. NAD-dependent histone deacetylase activity (H4-K16 specific) Source: UniProtKB-EC

    GO - Biological processi

    1. DNA mediated transformation Source: EnsemblPlants/Gramene
    2. histone acetylation Source: EnsemblPlants/Gramene
    3. jasmonic acid and ethylene-dependent systemic resistance Source: EnsemblPlants/Gramene
    4. negative regulation of transcription, DNA-templated Source: EnsemblPlants/Gramene
    5. pathogenesis Source: EnsemblPlants/Gramene
    6. regulation of multicellular organismal development Source: EnsemblPlants/Gramene
    7. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Molecular functioni

    Chromatin regulatorUniRule annotation, HydrolaseUniRule annotationSAAS annotation

    Keywords - Biological processi

    Transcription, Transcription regulationUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Histone deacetylaseUniRule annotation (EC:3.5.1.98UniRule annotation)
    Gene namesi
    Name:Sb04g007470Imported
    ORF Names:SORBIDRAFT_04g007470Imported
    OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
    Taxonomic identifieri4558 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
    ProteomesiUP000000768: Chromosome 4

    Organism-specific databases

    GrameneiC5XY14.

    Subcellular locationi

    Nucleus UniRule annotation

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    NucleusUniRule annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi4558.Sb04g007470.1.

    Structurei

    3D structure databases

    ProteinModelPortaliC5XY14.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the histone deacetylase family. HD Type 1 subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0123.
    HOGENOMiHOG000225180.
    KOiK06067.
    OMAiVSIRAHD.

    Family and domain databases

    Gene3Di3.40.800.20. 1 hit.
    InterProiIPR000286. His_deacetylse.
    IPR003084. His_deacetylse_1.
    IPR023801. His_deacetylse_dom.
    [Graphical view]
    PANTHERiPTHR10625. PTHR10625. 1 hit.
    PfamiPF00850. Hist_deacetyl. 1 hit.
    [Graphical view]
    PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
    PRINTSiPR01270. HDASUPER.
    PR01271. HISDACETLASE.

    Sequencei

    Sequence statusi: Complete.

    C5XY14-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDPSSAGSGG NSLPSVGADG QKRRVCYFYD SDVGNYYYGQ GHPMKPHRIR    50
    MTHSLLARYG LLNQMQVYRP NPARDRDLCR FHADDYINFL RSVTPETQQD 100
    QIRLLKRFNV GEDCPVFDGL YSFCQTYAGA SVGGAVKLNH GHDIAINWSG 150
    GLHHAKKCEA SGFCYVNDIV LAILELLKHH ERVLYVDIDI HHGDGVEEAF 200
    YTTDRVMTVS FHKFGDYFPG TGDIRDIGHS KGKYYSLNVP LDDGIDDESY 250
    QSLFKPIMGK VMEVFRPGAV VLQCGADSLS GDRLGCFNLS IRGHAECVRY 300
    MRSFNVPLLL LGGGGYTIRN VARCWCYETG VALGQELEDK MPVNEYYEYF 350
    GPDYTLHVAP SNMENKNTRN QLDDIRSKLL DNLSKLRHAP SVQFQERVPD 400
    TEVPEPDEDQ DDPDERHDPD SDMEVDDHKA VEESARRSIP GIKVKREFGE 450
    NETKVQDGGR IASDHRGVEP MAEDIGSSKQ APQADASAMA VDEPSNVKNE 500
    PESSTKLQDQ AAAYHKP 517
    Length:517
    Mass (Da):57,885
    Last modified:September 1, 2009 - v1
    Checksum:iB61250EA8BC725EF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000763 Genomic DNA. Translation: EES04741.1.
    RefSeqiXP_002451765.1. XM_002451720.1.
    UniGeneiSbi.15980.

    Genome annotation databases

    EnsemblPlantsiSb04g007470.1; Sb04g007470.1; Sb04g007470.
    GeneIDi8082952.
    KEGGisbi:SORBI_04g007470.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000763 Genomic DNA. Translation: EES04741.1 .
    RefSeqi XP_002451765.1. XM_002451720.1.
    UniGenei Sbi.15980.

    3D structure databases

    ProteinModelPortali C5XY14.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 4558.Sb04g007470.1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi Sb04g007470.1 ; Sb04g007470.1 ; Sb04g007470 .
    GeneIDi 8082952.
    KEGGi sbi:SORBI_04g007470.

    Organism-specific databases

    Gramenei C5XY14.

    Phylogenomic databases

    eggNOGi COG0123.
    HOGENOMi HOG000225180.
    KOi K06067.
    OMAi VSIRAHD.

    Family and domain databases

    Gene3Di 3.40.800.20. 1 hit.
    InterProi IPR000286. His_deacetylse.
    IPR003084. His_deacetylse_1.
    IPR023801. His_deacetylse_dom.
    [Graphical view ]
    PANTHERi PTHR10625. PTHR10625. 1 hit.
    Pfami PF00850. Hist_deacetyl. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF037913. His_deacetylse_1. 1 hit.
    PRINTSi PR01270. HDASUPER.
    PR01271. HISDACETLASE.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. BTx623Imported.

    Entry informationi

    Entry nameiC5XY14_SORBI
    AccessioniPrimary (citable) accession number: C5XY14
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 1, 2009
    Last sequence update: September 1, 2009
    Last modified: October 1, 2014
    This is version 33 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3