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C5XY14 (C5XY14_SORBI) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Histone deacetylase PIRNR PIRNR037913

EC=3.5.1.98 PIRNR PIRNR037913
Gene names
Name:Sb04g007470 EMBL EES04741.1
ORF Names:SORBIDRAFT_04g007470 EMBL EES04741.1
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]
Taxonomic identifier4558 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum

Protein attributes

Sequence length517 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone. PIRNR PIRNR037913

Subcellular location

Nucleus By similarity PIRNR PIRNR037913.

Sequence similarities

Belongs to the histone deacetylase family. HD Type 1 subfamily. PIRNR PIRNR037913

Ontologies

Keywords
   Biological processTranscription
Transcription regulation PIRNR PIRNR037913
   Cellular componentNucleus PIRNR PIRNR037913
   Molecular functionChromatin regulator PIRNR PIRNR037913
Hydrolase PIRNR PIRNR037913 SAAS SAAS023801
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processDNA mediated transformation

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

histone acetylation

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

jasmonic acid and ethylene-dependent systemic resistance

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

negative regulation of transcription, DNA-templated

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

pathogenesis

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

regulation of multicellular organismal development

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

transcription, DNA-templated

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentnucleus

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionNAD-dependent histone deacetylase activity (H3-K14 specific)

Inferred from electronic annotation. Source: UniProtKB-EC

NAD-dependent histone deacetylase activity (H3-K18 specific)

Inferred from electronic annotation. Source: UniProtKB-EC

NAD-dependent histone deacetylase activity (H3-K9 specific)

Inferred from electronic annotation. Source: UniProtKB-EC

NAD-dependent histone deacetylase activity (H4-K16 specific)

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
C5XY14 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: B61250EA8BC725EF

FASTA51757,885
        10         20         30         40         50         60 
MDPSSAGSGG NSLPSVGADG QKRRVCYFYD SDVGNYYYGQ GHPMKPHRIR MTHSLLARYG 

        70         80         90        100        110        120 
LLNQMQVYRP NPARDRDLCR FHADDYINFL RSVTPETQQD QIRLLKRFNV GEDCPVFDGL 

       130        140        150        160        170        180 
YSFCQTYAGA SVGGAVKLNH GHDIAINWSG GLHHAKKCEA SGFCYVNDIV LAILELLKHH 

       190        200        210        220        230        240 
ERVLYVDIDI HHGDGVEEAF YTTDRVMTVS FHKFGDYFPG TGDIRDIGHS KGKYYSLNVP 

       250        260        270        280        290        300 
LDDGIDDESY QSLFKPIMGK VMEVFRPGAV VLQCGADSLS GDRLGCFNLS IRGHAECVRY 

       310        320        330        340        350        360 
MRSFNVPLLL LGGGGYTIRN VARCWCYETG VALGQELEDK MPVNEYYEYF GPDYTLHVAP 

       370        380        390        400        410        420 
SNMENKNTRN QLDDIRSKLL DNLSKLRHAP SVQFQERVPD TEVPEPDEDQ DDPDERHDPD 

       430        440        450        460        470        480 
SDMEVDDHKA VEESARRSIP GIKVKREFGE NETKVQDGGR IASDHRGVEP MAEDIGSSKQ 

       490        500        510 
APQADASAMA VDEPSNVKNE PESSTKLQDQ AAAYHKP 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000763 Genomic DNA. Translation: EES04741.1.
RefSeqXP_002451765.1. XM_002451720.1.
UniGeneSbi.15980.

3D structure databases

ProteinModelPortalC5XY14.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING4558.Sb04g007470.1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsSb04g007470.1; Sb04g007470.1; Sb04g007470.
GeneID8082952.
KEGGsbi:SORBI_04g007470.

Organism-specific databases

GrameneC5XY14.

Phylogenomic databases

eggNOGCOG0123.
HOGENOMHOG000225180.
KOK06067.
OMAKSINHET.
ProtClustDBCLSN2685384.

Family and domain databases

Gene3D3.40.800.20. 1 hit.
InterProIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERPTHR10625. PTHR10625. 1 hit.
PfamPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSPR01270. HDASUPER.
PR01271. HISDACETLASE.
ProtoNetSearch...

Entry information

Entry nameC5XY14_SORBI
AccessionPrimary (citable) accession number: C5XY14
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: April 16, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)