C5XX83 (C5XX83_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein Sb04g025430 EMBL EES05394.1

Gene names

Name:	Sb04g025430 EMBL EES05394.1
ORF Names:	SORBIDRAFT_04g025430 EMBL EES05394.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare)

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	270 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 chitin-binding type-1 domain. RuleBase RU000410

Ontologies

Keywords
Ligand	Chitin-binding RuleBase RU000410 SAAS SAAS001002
PTM	Disulfide bond SAAS SAAS016283
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	cell wall macromolecule catabolic process Inferred from electronic annotation. Source: InterPro chitin catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	chitin binding Inferred from electronic annotation. Source: UniProtKB-KW chitinase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5XX83 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 27DB8CD4BF5CDD29	FASTA	270	28,434
	10 20 30 40 50 60 MAQTTKLAVA AAVLAALVLS AGAQNCGCAS DQCCSKYGYC GTGEDYCGAD TCQSGPCDVP 70 80 90 100 110 120 ATNNVSVASI VTPAFFDALL AQAAASCEAN GFYTRDAFLA AAGYYPSFGR TGTVDDSKRE 130 140 150 160 170 180 IAAFFGNANH ETIKFCYINE IDGPSKNYCD ANNTEWPCQA GKGYYGRGPL QISWNYNYGP 190 200 210 220 230 240 AGQSIGFDGL GDPDAVARSA VVAFRAALWY WMNSVHGVFV SGQGFGATIR AINGALECDG 250 260 270 KNPDSVNDRV AYYKQFCQDF GVDPGSNLTC

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed: 19189423] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000763 Genomic DNA. Translation: EES05394.1.
RefSeq	XP_002452418.1. XM_002452373.1.
UniGene	Sbi.19781.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb04g025430.1; Sb04g025430.1; Sb04g025430.
GeneID	8056503.
KEGG	sbi:SORBI_04g025430.
Phylogenomic databases
GeneTree	EPGT00070000027946.
OMA	ANHETIK.
PhylomeDB	C5XX83.
ProtClustDB	CLSN2692921.
Family and domain databases
InterPro	IPR001002. Chitin-bd_1. IPR018371. Chitin-binding_1_CS. IPR016283. Glyco_hydro_19. IPR000726. Glyco_hydro_19_cat. IPR023346. Lysozyme-like_dom. [Graphical view]
Gene3D	G3DSA:3.30.60.10. Chitin_bd_1. 1 hit.
Pfam	PF00187. Chitin_bind_1. 1 hit. PF00182. Glyco_hydro_19. 1 hit. [Graphical view]
PIRSF	PIRSF001060. Endochitinase. 1 hit.
ProDom	PD000609. Chitin_bd_1. 1 hit. [Graphical view] [Entries sharing at least one domain]
SMART	SM00270. ChtBD1. 1 hit. [Graphical view]
SUPFAM	SSF57016. Chitin_bd_1. 1 hit. SSF53955. SSF53955. 1 hit.
PROSITE	PS00026. CHIT_BIND_I_1. 1 hit. PS50941. CHIT_BIND_I_2. 1 hit. PS00773. CHITINASE_19_1. 1 hit. PS00774. CHITINASE_19_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C5XX83_SORBI

Accession

Primary (citable) accession number: C5XX83

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	January 25, 2012
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)