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C5XWJ8

- C5XWJ8_SORBI

UniProt

C5XWJ8 - C5XWJ8_SORBI

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Protein

Elongation factor Tu

Gene

Sb04g024850

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.UniRule annotation

GO - Molecular functioni

  1. GTPase activity Source: EnsemblPlants/Gramene
  2. GTP binding Source: UniProtKB-KW
  3. translation elongation factor activity Source: UniProtKB-KW

GO - Biological processi

  1. cuticle development Source: EnsemblPlants/Gramene
  2. very long-chain fatty acid metabolic process Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Molecular functioni

Elongation factorUniRule annotation

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

GTP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Elongation factor TuUniRule annotation
Gene namesi
Name:Sb04g024850Imported
ORF Names:SORBIDRAFT_04g024850Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
ProteomesiUP000000768: Chromosome 4

Organism-specific databases

GrameneiC5XWJ8.

Subcellular locationi

GO - Cellular componenti

  1. apoplast Source: EnsemblPlants/Gramene
  2. chloroplast envelope Source: EnsemblPlants/Gramene
  3. chloroplast stroma Source: EnsemblPlants/Gramene
  4. chloroplast thylakoid membrane Source: EnsemblPlants/Gramene
  5. nucleoid Source: EnsemblPlants/Gramene
  6. nucleolus Source: EnsemblPlants/Gramene
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb04g024850.1.

Structurei

3D structure databases

ProteinModelPortaliC5XWJ8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0050.
HOGENOMiHOG000229290.
InParanoidiC5XWJ8.
KOiK02358.
OMAiTTIMNDK.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
HAMAPiMF_00118_B. EF_Tu_B.
InterProiIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamiPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSiPR00315. ELONGATNFCT.
SUPFAMiSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEiPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5XWJ8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASLASASTS LLFPQATSSR SRVRLSTSLG FSAQPARLRS RAAAAGGQRR
60 70 80 90 100
GRLLVVRAAR GKFERTKPHV NIGTIGHVDH GKTTLTAALT MVLASVGGSA
110 120 130 140 150
PKKYDEIDAA PEERARGITI NTATVEYETE TRHYAHVDCP GHADYVKNMI
160 170 180 190 200
TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPKIVV FLNKKDMVDD
210 220 230 240 250
EELLELVELE VRELLSNYEY DGDDVPIIAG SALKALEALM ANPALKRGDN
260 270 280 290 300
EWVDYIFNLV DEVDNYIPVP QRQTDLPFLL AVEDVFSITG RGTVATGRIE
310 320 330 340 350
RGTVKVGDTV DIVGIRDTRT CTVTGVEMFQ KTMDDAMAGD NVGLLLRGMQ
360 370 380 390 400
KDDIERGMVL AKPGSITPHT KFEAVVYVLK KEEGGRHSPF FPGYRPQFYM
410 420 430 440 450
RTTDVTGSVT TIMNDKDEEA KMCMPGDRIK MIVQLIQPVA CEQGMRFAIR
460
EGGKTVGAGV INKIIE
Length:466
Mass (Da):50,721
Last modified:September 1, 2009 - v1
Checksum:iCB3401CB8BF46A9E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000763 Genomic DNA. Translation: EES05366.1.
RefSeqiXP_002452390.1. XM_002452345.1.

Genome annotation databases

EnsemblPlantsiSb04g024850.1; Sb04g024850.1; Sb04g024850.
GeneIDi8056476.
KEGGisbi:SORBI_04g024850.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000763 Genomic DNA. Translation: EES05366.1 .
RefSeqi XP_002452390.1. XM_002452345.1.

3D structure databases

ProteinModelPortali C5XWJ8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 4558.Sb04g024850.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi Sb04g024850.1 ; Sb04g024850.1 ; Sb04g024850 .
GeneIDi 8056476.
KEGGi sbi:SORBI_04g024850.

Organism-specific databases

Gramenei C5XWJ8.

Phylogenomic databases

eggNOGi COG0050.
HOGENOMi HOG000229290.
InParanoidi C5XWJ8.
KOi K02358.
OMAi TTIMNDK.

Family and domain databases

Gene3Di 3.40.50.300. 1 hit.
HAMAPi MF_00118_B. EF_Tu_B.
InterProi IPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view ]
Pfami PF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view ]
PRINTSi PR00315. ELONGATNFCT.
SUPFAMi SSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsi TIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEi PS00301. EFACTOR_GTP. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. BTx623Imported.

Entry informationi

Entry nameiC5XWJ8_SORBI
AccessioniPrimary (citable) accession number: C5XWJ8
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: October 29, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3