Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Elongation factor Tu

Gene

Sb04g024850

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.UniRule annotation

GO - Molecular functioni

  1. GTPase activity Source: EnsemblPlants/Gramene
  2. GTP binding Source: UniProtKB-KW
  3. translation elongation factor activity Source: UniProtKB-KW

GO - Biological processi

  1. cuticle development Source: EnsemblPlants/Gramene
  2. very long-chain fatty acid metabolic process Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Molecular functioni

Elongation factorUniRule annotation

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

GTP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Elongation factor TuUniRule annotation
Gene namesi
Name:Sb04g024850Imported
ORF Names:SORBIDRAFT_04g024850Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
ProteomesiUP000000768: Chromosome 4

Organism-specific databases

GrameneiC5XWJ8.

Subcellular locationi

GO - Cellular componenti

  1. apoplast Source: EnsemblPlants/Gramene
  2. chloroplast envelope Source: EnsemblPlants/Gramene
  3. chloroplast stroma Source: EnsemblPlants/Gramene
  4. chloroplast thylakoid membrane Source: EnsemblPlants/Gramene
  5. nucleoid Source: EnsemblPlants/Gramene
  6. nucleolus Source: EnsemblPlants/Gramene
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb04g024850.1.

Structurei

3D structure databases

ProteinModelPortaliC5XWJ8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0050.
HOGENOMiHOG000229290.
InParanoidiC5XWJ8.
KOiK02358.
OMAiNIKMVVN.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
HAMAPiMF_00118_B. EF_Tu_B.
InterProiIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamiPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSiPR00315. ELONGATNFCT.
SUPFAMiSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEiPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C5XWJ8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASLASASTS LLFPQATSSR SRVRLSTSLG FSAQPARLRS RAAAAGGQRR
60 70 80 90 100
GRLLVVRAAR GKFERTKPHV NIGTIGHVDH GKTTLTAALT MVLASVGGSA
110 120 130 140 150
PKKYDEIDAA PEERARGITI NTATVEYETE TRHYAHVDCP GHADYVKNMI
160 170 180 190 200
TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPKIVV FLNKKDMVDD
210 220 230 240 250
EELLELVELE VRELLSNYEY DGDDVPIIAG SALKALEALM ANPALKRGDN
260 270 280 290 300
EWVDYIFNLV DEVDNYIPVP QRQTDLPFLL AVEDVFSITG RGTVATGRIE
310 320 330 340 350
RGTVKVGDTV DIVGIRDTRT CTVTGVEMFQ KTMDDAMAGD NVGLLLRGMQ
360 370 380 390 400
KDDIERGMVL AKPGSITPHT KFEAVVYVLK KEEGGRHSPF FPGYRPQFYM
410 420 430 440 450
RTTDVTGSVT TIMNDKDEEA KMCMPGDRIK MIVQLIQPVA CEQGMRFAIR
460
EGGKTVGAGV INKIIE
Length:466
Mass (Da):50,721
Last modified:September 1, 2009 - v1
Checksum:iCB3401CB8BF46A9E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000763 Genomic DNA. Translation: EES05366.1.
RefSeqiXP_002452390.1. XM_002452345.1.

Genome annotation databases

EnsemblPlantsiSb04g024850.1; Sb04g024850.1; Sb04g024850.
GeneIDi8056476.
KEGGisbi:SORBI_04g024850.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000763 Genomic DNA. Translation: EES05366.1.
RefSeqiXP_002452390.1. XM_002452345.1.

3D structure databases

ProteinModelPortaliC5XWJ8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4558.Sb04g024850.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiSb04g024850.1; Sb04g024850.1; Sb04g024850.
GeneIDi8056476.
KEGGisbi:SORBI_04g024850.

Organism-specific databases

GrameneiC5XWJ8.

Phylogenomic databases

eggNOGiCOG0050.
HOGENOMiHOG000229290.
InParanoidiC5XWJ8.
KOiK02358.
OMAiNIKMVVN.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
HAMAPiMF_00118_B. EF_Tu_B.
InterProiIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamiPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSiPR00315. ELONGATNFCT.
SUPFAMiSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEiPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. BTx623Imported.

Entry informationi

Entry nameiC5XWJ8_SORBI
AccessioniPrimary (citable) accession number: C5XWJ8
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: January 7, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.