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C5XWJ8

- C5XWJ8_SORBI

UniProt

C5XWJ8 - C5XWJ8_SORBI

Protein

Elongation factor Tu

Gene

Sb04g024850

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (01 Sep 2009)
      Previous versions | rss
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    Functioni

    This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.UniRule annotation

    GO - Molecular functioni

    1. GTPase activity Source: InterPro
    2. GTP binding Source: UniProtKB-KW
    3. translation elongation factor activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    Elongation factorUniRule annotation

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    GTP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Elongation factor TuUniRule annotation
    Gene namesi
    Name:Sb04g024850Imported
    ORF Names:SORBIDRAFT_04g024850Imported
    OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
    Taxonomic identifieri4558 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
    ProteomesiUP000000768: Chromosome 4

    Organism-specific databases

    GrameneiC5XWJ8.

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: EnsemblPlants/Gramene
    2. chloroplast envelope Source: EnsemblPlants/Gramene
    3. chloroplast thylakoid membrane Source: EnsemblPlants/Gramene
    4. nucleoid Source: EnsemblPlants/Gramene
    5. nucleolus Source: EnsemblPlants/Gramene

    Interactioni

    Protein-protein interaction databases

    STRINGi4558.Sb04g024850.1.

    Structurei

    3D structure databases

    ProteinModelPortaliC5XWJ8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0050.
    HOGENOMiHOG000229290.
    KOiK02358.
    OMAiTTIMNDK.

    Family and domain databases

    Gene3Di3.40.50.300. 1 hit.
    HAMAPiMF_00118_B. EF_Tu_B.
    InterProiIPR000795. EF_GTP-bd_dom.
    IPR027417. P-loop_NTPase.
    IPR005225. Small_GTP-bd_dom.
    IPR009000. Transl_B-barrel.
    IPR009001. Transl_elong_EF1A/Init_IF2_C.
    IPR004161. Transl_elong_EFTu/EF1A_2.
    IPR004541. Transl_elong_EFTu/EF1A_bac/org.
    IPR004160. Transl_elong_EFTu/EF1A_C.
    [Graphical view]
    PfamiPF00009. GTP_EFTU. 1 hit.
    PF03144. GTP_EFTU_D2. 1 hit.
    PF03143. GTP_EFTU_D3. 1 hit.
    [Graphical view]
    PRINTSiPR00315. ELONGATNFCT.
    SUPFAMiSSF50447. SSF50447. 1 hit.
    SSF50465. SSF50465. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsiTIGR00485. EF-Tu. 1 hit.
    TIGR00231. small_GTP. 1 hit.
    PROSITEiPS00301. EFACTOR_GTP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C5XWJ8-1 [UniParc]FASTAAdd to Basket

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    MASLASASTS LLFPQATSSR SRVRLSTSLG FSAQPARLRS RAAAAGGQRR    50
    GRLLVVRAAR GKFERTKPHV NIGTIGHVDH GKTTLTAALT MVLASVGGSA 100
    PKKYDEIDAA PEERARGITI NTATVEYETE TRHYAHVDCP GHADYVKNMI 150
    TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPKIVV FLNKKDMVDD 200
    EELLELVELE VRELLSNYEY DGDDVPIIAG SALKALEALM ANPALKRGDN 250
    EWVDYIFNLV DEVDNYIPVP QRQTDLPFLL AVEDVFSITG RGTVATGRIE 300
    RGTVKVGDTV DIVGIRDTRT CTVTGVEMFQ KTMDDAMAGD NVGLLLRGMQ 350
    KDDIERGMVL AKPGSITPHT KFEAVVYVLK KEEGGRHSPF FPGYRPQFYM 400
    RTTDVTGSVT TIMNDKDEEA KMCMPGDRIK MIVQLIQPVA CEQGMRFAIR 450
    EGGKTVGAGV INKIIE 466
    Length:466
    Mass (Da):50,721
    Last modified:September 1, 2009 - v1
    Checksum:iCB3401CB8BF46A9E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000763 Genomic DNA. Translation: EES05366.1.
    RefSeqiXP_002452390.1. XM_002452345.1.

    Genome annotation databases

    EnsemblPlantsiSb04g024850.1; Sb04g024850.1; Sb04g024850.
    GeneIDi8056476.
    KEGGisbi:SORBI_04g024850.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000763 Genomic DNA. Translation: EES05366.1 .
    RefSeqi XP_002452390.1. XM_002452345.1.

    3D structure databases

    ProteinModelPortali C5XWJ8.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 4558.Sb04g024850.1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi Sb04g024850.1 ; Sb04g024850.1 ; Sb04g024850 .
    GeneIDi 8056476.
    KEGGi sbi:SORBI_04g024850.

    Organism-specific databases

    Gramenei C5XWJ8.

    Phylogenomic databases

    eggNOGi COG0050.
    HOGENOMi HOG000229290.
    KOi K02358.
    OMAi TTIMNDK.

    Family and domain databases

    Gene3Di 3.40.50.300. 1 hit.
    HAMAPi MF_00118_B. EF_Tu_B.
    InterProi IPR000795. EF_GTP-bd_dom.
    IPR027417. P-loop_NTPase.
    IPR005225. Small_GTP-bd_dom.
    IPR009000. Transl_B-barrel.
    IPR009001. Transl_elong_EF1A/Init_IF2_C.
    IPR004161. Transl_elong_EFTu/EF1A_2.
    IPR004541. Transl_elong_EFTu/EF1A_bac/org.
    IPR004160. Transl_elong_EFTu/EF1A_C.
    [Graphical view ]
    Pfami PF00009. GTP_EFTU. 1 hit.
    PF03144. GTP_EFTU_D2. 1 hit.
    PF03143. GTP_EFTU_D3. 1 hit.
    [Graphical view ]
    PRINTSi PR00315. ELONGATNFCT.
    SUPFAMi SSF50447. SSF50447. 1 hit.
    SSF50465. SSF50465. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsi TIGR00485. EF-Tu. 1 hit.
    TIGR00231. small_GTP. 1 hit.
    PROSITEi PS00301. EFACTOR_GTP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. BTx623Imported.

    Entry informationi

    Entry nameiC5XWJ8_SORBI
    AccessioniPrimary (citable) accession number: C5XWJ8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 1, 2009
    Last sequence update: September 1, 2009
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3