Putative uncharacterized protein Sb04g021540

Preferred order of sections

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein Sb04g021540 EMBL EES06902.1

Gene names

Name:	Sb04g021540 EMBL EES06902.1
ORF Names:	SORBIDRAFT_04g021540 EMBL EES06902.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	803 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	glycogen biosynthetic process Inferred from electronic annotation. Source: InterPro starch metabolic process Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Cellular_component	chloroplast stroma Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Molecular_function	1,4-alpha-glucan branching enzyme activity Inferred from electronic annotation. Source: InterPro cation binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

C5XTD4 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: 6FAC41C9AB621378
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FASTA

803

90,755

        10         20         30         40         50         60 
MAAFAVSGAA LGGAVRAPRL TGGEEGSLVF RRTGPFLTRA GGARVGGSGT HGAMRAAAAS 

        70         80         90        100        110        120 
SRKAVVVAEG ENDGLASKAD SAQFQSDELE VPDVTEETMC DAGVADAQAL NRVRVVPPPS 

       130        140        150        160        170        180 
DGQKIFQIDP MLQGYKYHLE YRYSLYRRIR SDIDEHEGGL EAFSRSYEKF GFNRSAEGIT 

       190        200        210        220        230        240 
YREWAPGALS AALVGDFNNW DPNADRMSKN EFGVWEIFLP NNADGTSPIP HGTRVKVRMD 

       250        260        270        280        290        300 
TPSGIKDSIP AWIKYSVQAP GEIPYDGLYY DPPEEVKYVF KHPKPKRPKS LRIYETHVGM 

       310        320        330        340        350        360 
SSPEPKINTY ANFRDEVLPR IKKLGYNAVQ IMAIQEHSYY GSFGYHVTNF FAPSSRFGTP 

       370        380        390        400        410        420 
EDLKSMIDRA HELGLLVLMD VVHSHASSNT LDGLNGFDGT DTHYFHSGPR GHHWMWDSRL 

       430        440        450        460        470        480 
FNYGNWEVLR FLLSNARWWL EEYKFDGFRF DGVTSMMYTH HGLQVTFTGN FNEYFGFATD 

       490        500        510        520        530        540 
VDAVVYLMLV NDLIHGLYPE AVTIGEDVSG MPTFALPVQD GGVGFDYRMH MAVADKWIEL 

       550        560        570        580        590        600 
LKQSDEAWKM GDIVHTLTNR RWLEKCVTYA ESHDQALVGD KTIAFWLMDK DMYDFMALDR 

       610        620        630        640        650        660 
PATPTIDRGI ALHKMIRLIT MGLGGEGYLN FMGNEFGHPE WIDFPRGPQR LPSGKFIPGN 

       670        680        690        700        710        720 
NNSYDKCRRR FDLGDADYLR YRGMQEFDQA MQHLEQKYGF MTSDHQYISR KHEEDKMIVF 

       730        740        750        760        770        780 
EKGDLVFVFN FHCNNSYFDY RIGCRKPGMY KVVLDSDAGL FGGFGRIHHA AEHFTTDCSH 

       790        800 
DNRPHSFSVY TPSRTCVVYA PAE

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References

[1]

"The Sorghum bicolor genome and the diversification of grasses."
Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A.

Rokhsar D.S.
Nature 457:551-556(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000763 Genomic DNA. Translation: EES06902.1.
RefSeq	XP_002453926.1. XM_002453881.1.
UniGene	Sbi.4641.
3D structure databases
ProteinModelPortal	C5XTD4.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb04g021540.1; Sb04g021540.1; Sb04g021540.
GeneID	8059621.
KEGG	sbi:SORBI_04g021540.
Organism-specific databases
Gramene	C5XTD4.
Phylogenomic databases
KO	K00700.
OMA	IAVIMDI.
ProtClustDB	PLN02447.
Family and domain databases
Gene3D	2.60.40.10. 1 hit. 2.60.40.1180. 1 hit. 3.20.20.80. 1 hit.
InterPro	IPR006407. 1-4-A-glucan_branch_enz. IPR006048. A-amylase_b_C. IPR015902. Glyco_hydro_13. IPR013780. Glyco_hydro_13_b. IPR006047. Glyco_hydro_13_cat_dom. IPR004193. Glyco_hydro_13_N. IPR013781. Glyco_hydro_catalytic_dom. IPR017853. Glycoside_hydrolase_SF. IPR013783. Ig-like_fold. IPR014756. Ig_E-set. [Graphical view]
PANTHER	PTHR10357. PTHR10357. 1 hit.
Pfam	PF00128. Alpha-amylase. 1 hit. PF02806. Alpha-amylase_C. 1 hit. PF02922. CBM_48. 1 hit. [Graphical view]
PIRSF	PIRSF000463. GlgB. 1 hit.
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit. SSF81296. Ig_E-set. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C5XTD4_SORBI

Accession

Primary (citable) accession number: C5XTD4

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	April 3, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Preferred order of sections

Names and origin

Protein attributes

Ontologies

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Family and domain databases

Entry information