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Protein
Submitted name:

Putative uncharacterized protein Sb04g021540

Gene

Sb04g021540

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei451 – 4511NucleophileUniRule annotation
Active sitei506 – 5061Proton donorUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized protein Sb04g021540Imported
Gene namesi
Name:Sb04g021540Imported
ORF Names:SORBIDRAFT_04g021540Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
ProteomesiUP000000768 Componenti: Chromosome 4

Organism-specific databases

GrameneiC5XTD4.

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb04g021540.1.

Structurei

3D structure databases

ProteinModelPortaliC5XTD4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiC5XTD4.
KOiK00700.
OMAiSHDNRPH.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.

Sequencei

Sequence statusi: Complete.

C5XTD4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAFAVSGAA LGGAVRAPRL TGGEEGSLVF RRTGPFLTRA GGARVGGSGT
60 70 80 90 100
HGAMRAAAAS SRKAVVVAEG ENDGLASKAD SAQFQSDELE VPDVTEETMC
110 120 130 140 150
DAGVADAQAL NRVRVVPPPS DGQKIFQIDP MLQGYKYHLE YRYSLYRRIR
160 170 180 190 200
SDIDEHEGGL EAFSRSYEKF GFNRSAEGIT YREWAPGALS AALVGDFNNW
210 220 230 240 250
DPNADRMSKN EFGVWEIFLP NNADGTSPIP HGTRVKVRMD TPSGIKDSIP
260 270 280 290 300
AWIKYSVQAP GEIPYDGLYY DPPEEVKYVF KHPKPKRPKS LRIYETHVGM
310 320 330 340 350
SSPEPKINTY ANFRDEVLPR IKKLGYNAVQ IMAIQEHSYY GSFGYHVTNF
360 370 380 390 400
FAPSSRFGTP EDLKSMIDRA HELGLLVLMD VVHSHASSNT LDGLNGFDGT
410 420 430 440 450
DTHYFHSGPR GHHWMWDSRL FNYGNWEVLR FLLSNARWWL EEYKFDGFRF
460 470 480 490 500
DGVTSMMYTH HGLQVTFTGN FNEYFGFATD VDAVVYLMLV NDLIHGLYPE
510 520 530 540 550
AVTIGEDVSG MPTFALPVQD GGVGFDYRMH MAVADKWIEL LKQSDEAWKM
560 570 580 590 600
GDIVHTLTNR RWLEKCVTYA ESHDQALVGD KTIAFWLMDK DMYDFMALDR
610 620 630 640 650
PATPTIDRGI ALHKMIRLIT MGLGGEGYLN FMGNEFGHPE WIDFPRGPQR
660 670 680 690 700
LPSGKFIPGN NNSYDKCRRR FDLGDADYLR YRGMQEFDQA MQHLEQKYGF
710 720 730 740 750
MTSDHQYISR KHEEDKMIVF EKGDLVFVFN FHCNNSYFDY RIGCRKPGMY
760 770 780 790 800
KVVLDSDAGL FGGFGRIHHA AEHFTTDCSH DNRPHSFSVY TPSRTCVVYA

PAE
Length:803
Mass (Da):90,755
Last modified:September 1, 2009 - v1
Checksum:i6FAC41C9AB621378
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000763 Genomic DNA. Translation: EES06902.1.
RefSeqiXP_002453926.1. XM_002453881.1.
UniGeneiSbi.4641.

Genome annotation databases

EnsemblPlantsiSb04g021540.1; Sb04g021540.1; Sb04g021540.
GeneIDi8059621.
KEGGisbi:SORBI_04g021540.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000763 Genomic DNA. Translation: EES06902.1.
RefSeqiXP_002453926.1. XM_002453881.1.
UniGeneiSbi.4641.

3D structure databases

ProteinModelPortaliC5XTD4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4558.Sb04g021540.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiSb04g021540.1; Sb04g021540.1; Sb04g021540.
GeneIDi8059621.
KEGGisbi:SORBI_04g021540.

Organism-specific databases

GrameneiC5XTD4.

Phylogenomic databases

InParanoidiC5XTD4.
KOiK00700.
OMAiSHDNRPH.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. BTx623Imported.

Entry informationi

Entry nameiC5XTD4_SORBI
AccessioniPrimary (citable) accession number: C5XTD4
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: July 22, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.