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Protein

Alpha-amylase

Gene

SORBI_004G309200

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei203NucleophileUniRule annotation1
Active sitei228Proton donorUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosidaseUniRule annotation, Hydrolase
Biological processCarbohydrate metabolismUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
ORF Names:SORBI_004G309200Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogonodaeAndropogoneaeSorghinaeSorghum
Proteomesi
  • UP000000768 Componenti: Chromosome 4

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 24Sequence analysisAdd BLAST24
ChainiPRO_500295651925 – 428Alpha-amylaseSequence analysisAdd BLAST404

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb04g034150.1.

Structurei

3D structure databases

ProteinModelPortaliC5XSV0.
SMRiC5XSV0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini25 – 366AamyInterPro annotationAdd BLAST342
Domaini367 – 427Alpha-amyl_C2InterPro annotationAdd BLAST61

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiKOG0471. Eukaryota.
COG0366. LUCA.
HOGENOMiHOG000239525.
InParanoidiC5XSV0.
KOiK01176.
OMAiNGERCCA.
OrthoDBiEOG093600FS.

Family and domain databases

InterProiView protein in InterPro
IPR012850. A-amylase_bs_C.
IPR013775. A-amylase_pln.
IPR006046. Alpha_amylase.
IPR006047. Glyco_hydro_13_cat_dom.
IPR017853. Glycoside_hydrolase_SF.
PfamiView protein in Pfam
PF07821. Alpha-amyl_C2. 1 hit.
PF00128. Alpha-amylase. 1 hit.
PIRSFiPIRSF001028. Alph-amls_plant. 1 hit.
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiView protein in SMART
SM00642. Aamy. 1 hit.
SM00810. Alpha-amyl_C2. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

C5XSV0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASTSLCMCF FLVFLGLSFN LALGQVLFQG FNWESWKQNG GWYKFLMDKV
60 70 80 90 100
DDIAEAGITH VWLPPPSHSV AEQGYLPGRL YDLDASKYGN KAQLKSLIKA
110 120 130 140 150
FHDKGVKVIA DIVINHRTAE HKDGRGIYCL FEGGTSDSRL DWGPHMICRD
160 170 180 190 200
DKAYSDGTGN LDTGLDFPGA PDIDHLNKRV QRELIGWLKW LQTDIGFDAW
210 220 230 240 250
RLDFAKGYSA EVAKIFIDNA KPSFAVAELW SSLAYGGDGK PLQDQNAHRQ
260 270 280 290 300
ELVNWVDRVG GKASPATTFD FTTKGILNVA VDGELWRLRG ADGKAPGMIG
310 320 330 340 350
WWPAKAVTFV DNHDTGSTQH MWPFPADKVI QGYAYILTHP GNPCIFYDHF
360 370 380 390 400
FDSGLKNEIA QLVSIRNRHG IQPDSKLRII KADADLYLAE IDDKVIVKIG
410 420
PRFGASQLIP GGFQVVAHGN GYAVWEKI
Length:428
Mass (Da):47,605
Last modified:September 1, 2009 - v1
Checksum:i70E03172EF1DCC56
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000763 Genomic DNA. Translation: EES05857.1.
RefSeqiXP_002452881.1. XM_002452836.1.

Genome annotation databases

EnsemblPlantsiSb04g034150.1; Sb04g034150.1; Sb04g034150.
GeneIDi8075199.
GrameneiSb04g034150.1; Sb04g034150.1; Sb04g034150.
KEGGisbi:SORBI_04g034150.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000763 Genomic DNA. Translation: EES05857.1.
RefSeqiXP_002452881.1. XM_002452836.1.

3D structure databases

ProteinModelPortaliC5XSV0.
SMRiC5XSV0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4558.Sb04g034150.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiSb04g034150.1; Sb04g034150.1; Sb04g034150.
GeneIDi8075199.
GrameneiSb04g034150.1; Sb04g034150.1; Sb04g034150.
KEGGisbi:SORBI_04g034150.

Phylogenomic databases

eggNOGiKOG0471. Eukaryota.
COG0366. LUCA.
HOGENOMiHOG000239525.
InParanoidiC5XSV0.
KOiK01176.
OMAiNGERCCA.
OrthoDBiEOG093600FS.

Family and domain databases

InterProiView protein in InterPro
IPR012850. A-amylase_bs_C.
IPR013775. A-amylase_pln.
IPR006046. Alpha_amylase.
IPR006047. Glyco_hydro_13_cat_dom.
IPR017853. Glycoside_hydrolase_SF.
PfamiView protein in Pfam
PF07821. Alpha-amyl_C2. 1 hit.
PF00128. Alpha-amylase. 1 hit.
PIRSFiPIRSF001028. Alph-amls_plant. 1 hit.
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiView protein in SMART
SM00642. Aamy. 1 hit.
SM00810. Alpha-amyl_C2. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiC5XSV0_SORBI
AccessioniPrimary (citable) accession number: C5XSV0
Entry historyiIntegrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: May 10, 2017
This is version 52 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.