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C5XSV0 (C5XSV0_SORBI) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Alpha-amylase RuleBase RU361134

EC=3.2.1.1 RuleBase RU361134
Gene names
Name:Sb04g034150 EMBL EES05857.1
ORF Names:SORBIDRAFT_04g034150 EMBL EES05857.1
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]
Taxonomic identifier4558 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum

Protein attributes

Sequence length428 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units. RuleBase RU361134

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site2031Nucleophile By similarity PIRSR PIRSR001028-1
Active site2281Proton donor By similarity PIRSR PIRSR001028-1

Sequences

Sequence LengthMass (Da)Tools
C5XSV0 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: 70E03172EF1DCC56

FASTA42847,605
        10         20         30         40         50         60 
MASTSLCMCF FLVFLGLSFN LALGQVLFQG FNWESWKQNG GWYKFLMDKV DDIAEAGITH 

        70         80         90        100        110        120 
VWLPPPSHSV AEQGYLPGRL YDLDASKYGN KAQLKSLIKA FHDKGVKVIA DIVINHRTAE 

       130        140        150        160        170        180 
HKDGRGIYCL FEGGTSDSRL DWGPHMICRD DKAYSDGTGN LDTGLDFPGA PDIDHLNKRV 

       190        200        210        220        230        240 
QRELIGWLKW LQTDIGFDAW RLDFAKGYSA EVAKIFIDNA KPSFAVAELW SSLAYGGDGK 

       250        260        270        280        290        300 
PLQDQNAHRQ ELVNWVDRVG GKASPATTFD FTTKGILNVA VDGELWRLRG ADGKAPGMIG 

       310        320        330        340        350        360 
WWPAKAVTFV DNHDTGSTQH MWPFPADKVI QGYAYILTHP GNPCIFYDHF FDSGLKNEIA 

       370        380        390        400        410        420 
QLVSIRNRHG IQPDSKLRII KADADLYLAE IDDKVIVKIG PRFGASQLIP GGFQVVAHGN 


GYAVWEKI 

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000763 Genomic DNA. Translation: EES05857.1.
RefSeqXP_002452881.1. XM_002452836.1.

3D structure databases

ProteinModelPortalC5XSV0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING4558.Sb04g034150.1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsSb04g034150.1; Sb04g034150.1; Sb04g034150.
GeneID8075199.
KEGGsbi:SORBI_04g034150.

Organism-specific databases

GrameneC5XSV0.

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHOG000239525.
KOK01176.
OMAWTSMANG.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProIPR012850. A-amylase_bs_C.
IPR013775. A-amylase_pln.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF07821. Alpha-amyl_C2. 1 hit.
PF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFPIRSF001028. Alph-amls_plant. 1 hit.
PRINTSPR00110. ALPHAAMYLASE.
SMARTSM00642. Aamy. 1 hit.
SM00810. Alpha-amyl_C2. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC5XSV0_SORBI
AccessionPrimary (citable) accession number: C5XSV0
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: July 9, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)