Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

C5XSV0

- C5XSV0_SORBI

UniProt

C5XSV0 - C5XSV0_SORBI

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Alpha-amylase

Gene

Sb04g034150

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei203 – 2031NucleophileUniRule annotation
Active sitei228 – 2281Proton donorUniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. calcium ion binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Name:Sb04g034150Imported
ORF Names:SORBIDRAFT_04g034150Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
ProteomesiUP000000768: Chromosome 4

Organism-specific databases

GrameneiC5XSV0.

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb04g034150.1.

Structurei

3D structure databases

ProteinModelPortaliC5XSV0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000239525.
InParanoidiC5XSV0.
KOiK01176.
OMAiWTSMANG.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR012850. A-amylase_bs_C.
IPR013775. A-amylase_pln.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF07821. Alpha-amyl_C2. 1 hit.
PF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001028. Alph-amls_plant. 1 hit.
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00810. Alpha-amyl_C2. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

C5XSV0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASTSLCMCF FLVFLGLSFN LALGQVLFQG FNWESWKQNG GWYKFLMDKV
60 70 80 90 100
DDIAEAGITH VWLPPPSHSV AEQGYLPGRL YDLDASKYGN KAQLKSLIKA
110 120 130 140 150
FHDKGVKVIA DIVINHRTAE HKDGRGIYCL FEGGTSDSRL DWGPHMICRD
160 170 180 190 200
DKAYSDGTGN LDTGLDFPGA PDIDHLNKRV QRELIGWLKW LQTDIGFDAW
210 220 230 240 250
RLDFAKGYSA EVAKIFIDNA KPSFAVAELW SSLAYGGDGK PLQDQNAHRQ
260 270 280 290 300
ELVNWVDRVG GKASPATTFD FTTKGILNVA VDGELWRLRG ADGKAPGMIG
310 320 330 340 350
WWPAKAVTFV DNHDTGSTQH MWPFPADKVI QGYAYILTHP GNPCIFYDHF
360 370 380 390 400
FDSGLKNEIA QLVSIRNRHG IQPDSKLRII KADADLYLAE IDDKVIVKIG
410 420
PRFGASQLIP GGFQVVAHGN GYAVWEKI
Length:428
Mass (Da):47,605
Last modified:September 1, 2009 - v1
Checksum:i70E03172EF1DCC56
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000763 Genomic DNA. Translation: EES05857.1.
RefSeqiXP_002452881.1. XM_002452836.1.

Genome annotation databases

EnsemblPlantsiSb04g034150.1; Sb04g034150.1; Sb04g034150.
GeneIDi8075199.
KEGGisbi:SORBI_04g034150.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000763 Genomic DNA. Translation: EES05857.1 .
RefSeqi XP_002452881.1. XM_002452836.1.

3D structure databases

ProteinModelPortali C5XSV0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 4558.Sb04g034150.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi Sb04g034150.1 ; Sb04g034150.1 ; Sb04g034150 .
GeneIDi 8075199.
KEGGi sbi:SORBI_04g034150.

Organism-specific databases

Gramenei C5XSV0.

Phylogenomic databases

eggNOGi COG0366.
HOGENOMi HOG000239525.
InParanoidi C5XSV0.
KOi K01176.
OMAi WTSMANG.

Family and domain databases

Gene3Di 2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProi IPR012850. A-amylase_bs_C.
IPR013775. A-amylase_pln.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF07821. Alpha-amyl_C2. 1 hit.
PF00128. Alpha-amylase. 1 hit.
[Graphical view ]
PIRSFi PIRSF001028. Alph-amls_plant. 1 hit.
PRINTSi PR00110. ALPHAAMYLASE.
SMARTi SM00642. Aamy. 1 hit.
SM00810. Alpha-amyl_C2. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. BTx623Imported.

Entry informationi

Entry nameiC5XSV0_SORBI
AccessioniPrimary (citable) accession number: C5XSV0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: October 29, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3