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C5XSV0

- C5XSV0_SORBI

UniProt

C5XSV0 - C5XSV0_SORBI

Protein

Alpha-amylase

Gene

Sb04g034150

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 38 (01 Oct 2014)
      Sequence version 1 (01 Sep 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei203 – 2031NucleophileUniRule annotation
    Active sitei228 – 2281Proton donorUniRule annotation

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB-EC
    2. calcium ion binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    GlycosidaseUniRule annotation, Hydrolase

    Keywords - Biological processi

    Carbohydrate metabolismUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
    Gene namesi
    Name:Sb04g034150Imported
    ORF Names:SORBIDRAFT_04g034150Imported
    OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
    Taxonomic identifieri4558 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
    ProteomesiUP000000768: Chromosome 4

    Organism-specific databases

    GrameneiC5XSV0.

    Interactioni

    Protein-protein interaction databases

    STRINGi4558.Sb04g034150.1.

    Structurei

    3D structure databases

    ProteinModelPortaliC5XSV0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0366.
    HOGENOMiHOG000239525.
    KOiK01176.
    OMAiWTSMANG.

    Family and domain databases

    Gene3Di2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProiIPR012850. A-amylase_bs_C.
    IPR013775. A-amylase_pln.
    IPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF07821. Alpha-amyl_C2. 1 hit.
    PF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF001028. Alph-amls_plant. 1 hit.
    PRINTSiPR00110. ALPHAAMYLASE.
    SMARTiSM00642. Aamy. 1 hit.
    SM00810. Alpha-amyl_C2. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    C5XSV0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MASTSLCMCF FLVFLGLSFN LALGQVLFQG FNWESWKQNG GWYKFLMDKV    50
    DDIAEAGITH VWLPPPSHSV AEQGYLPGRL YDLDASKYGN KAQLKSLIKA 100
    FHDKGVKVIA DIVINHRTAE HKDGRGIYCL FEGGTSDSRL DWGPHMICRD 150
    DKAYSDGTGN LDTGLDFPGA PDIDHLNKRV QRELIGWLKW LQTDIGFDAW 200
    RLDFAKGYSA EVAKIFIDNA KPSFAVAELW SSLAYGGDGK PLQDQNAHRQ 250
    ELVNWVDRVG GKASPATTFD FTTKGILNVA VDGELWRLRG ADGKAPGMIG 300
    WWPAKAVTFV DNHDTGSTQH MWPFPADKVI QGYAYILTHP GNPCIFYDHF 350
    FDSGLKNEIA QLVSIRNRHG IQPDSKLRII KADADLYLAE IDDKVIVKIG 400
    PRFGASQLIP GGFQVVAHGN GYAVWEKI 428
    Length:428
    Mass (Da):47,605
    Last modified:September 1, 2009 - v1
    Checksum:i70E03172EF1DCC56
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000763 Genomic DNA. Translation: EES05857.1.
    RefSeqiXP_002452881.1. XM_002452836.1.

    Genome annotation databases

    EnsemblPlantsiSb04g034150.1; Sb04g034150.1; Sb04g034150.
    GeneIDi8075199.
    KEGGisbi:SORBI_04g034150.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000763 Genomic DNA. Translation: EES05857.1 .
    RefSeqi XP_002452881.1. XM_002452836.1.

    3D structure databases

    ProteinModelPortali C5XSV0.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 4558.Sb04g034150.1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi Sb04g034150.1 ; Sb04g034150.1 ; Sb04g034150 .
    GeneIDi 8075199.
    KEGGi sbi:SORBI_04g034150.

    Organism-specific databases

    Gramenei C5XSV0.

    Phylogenomic databases

    eggNOGi COG0366.
    HOGENOMi HOG000239525.
    KOi K01176.
    OMAi WTSMANG.

    Family and domain databases

    Gene3Di 2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProi IPR012850. A-amylase_bs_C.
    IPR013775. A-amylase_pln.
    IPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF07821. Alpha-amyl_C2. 1 hit.
    PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF001028. Alph-amls_plant. 1 hit.
    PRINTSi PR00110. ALPHAAMYLASE.
    SMARTi SM00642. Aamy. 1 hit.
    SM00810. Alpha-amyl_C2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. BTx623Imported.

    Entry informationi

    Entry nameiC5XSV0_SORBI
    AccessioniPrimary (citable) accession number: C5XSV0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 1, 2009
    Last sequence update: September 1, 2009
    Last modified: October 1, 2014
    This is version 38 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3