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C5XHC8 (C5XHC8_SORBI) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Eukaryotic translation initiation factor 6 HAMAP-Rule MF_03132

Short name=eIF-6 HAMAP-Rule MF_03132
Gene names
Name:Sb03g011410 EMBL EES02790.1
Synonyms:EIF6 HAMAP-Rule MF_03132 EMBL EES02790.1, EIF6-1 EMBL EES02790.1
ORF Names:SORBIDRAFT_03g011410 EMBL EES02790.1
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]
Taxonomic identifier4558 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum

Protein attributes

Sequence length257 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis By similarity. HAMAP-Rule MF_03132

Subunit structure

Monomer. Associates with the 60S ribosomal subunit By similarity. HAMAP-Rule MF_03132

Subcellular location

Cytoplasm. Nucleusnucleolus. Note: Shuttles between cytoplasm and nucleus/nucleolus By similarity. HAMAP-Rule MF_03132

Sequence similarities

Belongs to the eIF-6 family. HAMAP-Rule MF_03132

Sequences

Sequence LengthMass (Da)Tools
C5XHC8 [UniParc].

Last modified September 1, 2009. Version 1.
Checksum: 6DD2937B50820C0F

FASTA25727,322
        10         20         30         40         50         60 
MASRVKFENS CEVGVFARLT NAYCLVPAGA ASQGFYSVLE GELAGAVPVV RTSVAGTRIV 

        70         80         90        100        110        120 
GRLCVGNKRG LLLPHTATDQ EIQHLRNSLP DEVVVKCVDE RLSALGNCIA CNDHVALTHP 

       130        140        150        160        170        180 
DLDKETEEVI SDVLGVEVFR QTIAGNILVG SYCTFTNKGG LVHPQTSVED LDELSTLLQV 

       190        200        210        220        230        240 
PMVAGTVNRG SEVVSAGMAV NDWTAFCGSD TTATEVSVVE SVFRLRDPRA GALGSVQDFF 

       250 
TSGAGLLPEP RQKTRLC 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000762 Genomic DNA. Translation: EES02790.1.
RefSeqXP_002457670.1. XM_002457625.1.
UniGeneSbi.5473.

3D structure databases

ProteinModelPortalC5XHC8.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING4558.Sb03g011410.1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsSb03g011410.1; Sb03g011410.1; Sb03g011410.
GeneID8078117.
KEGGsbi:SORBI_03g011410.

Organism-specific databases

GrameneC5XHC8.

Phylogenomic databases

eggNOGCOG1976.
HOGENOMHOG000230605.
KOK03264.
OMAMAVNDWT.

Family and domain databases

HAMAPMF_00032. eIF_6.
InterProIPR002769. eIF6.
[Graphical view]
PANTHERPTHR10784. PTHR10784. 1 hit.
PfamPF01912. eIF-6. 1 hit.
[Graphical view]
PIRSFPIRSF006413. IF-6. 1 hit.
SMARTSM00654. eIF6. 1 hit.
[Graphical view]
TIGRFAMsTIGR00323. eIF-6. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC5XHC8_SORBI
AccessionPrimary (citable) accession number: C5XHC8
Entry history
Integrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: July 9, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)