Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

C5XHC8

- C5XHC8_SORBI

UniProt

C5XHC8 - C5XHC8_SORBI

Protein

Eukaryotic translation initiation factor 6

Gene

Sb03g011410

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (01 Sep 2009)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.UniRule annotation

    GO - Molecular functioni

    1. ribosomal large subunit binding Source: UniProtKB-HAMAP
    2. ribosome binding Source: InterPro
    3. translation initiation factor activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. mature ribosome assembly Source: UniProtKB-HAMAP
    2. ribosomal large subunit biogenesis Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Initiation factorUniRule annotation

    Keywords - Biological processi

    Protein biosynthesis, Ribosome biogenesisUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Eukaryotic translation initiation factor 6UniRule annotation
    Short name:
    eIF-6UniRule annotation
    Gene namesi
    Name:Sb03g011410Imported
    Synonyms:EIF6UniRule annotationImported, EIF6-1Imported
    ORF Names:SORBIDRAFT_03g011410Imported
    OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
    Taxonomic identifieri4558 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
    ProteomesiUP000000768: Chromosome 3

    Organism-specific databases

    GrameneiC5XHC8.

    Subcellular locationi

    Cytoplasm UniRule annotation. Nucleusnucleolus UniRule annotation
    Note: Shuttles between cytoplasm and nucleus/nucleolus.UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell
    2. nucleolus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotation, NucleusUniRule annotation

    Interactioni

    Subunit structurei

    Monomer. Associates with the 60S ribosomal subunit.UniRule annotation

    Protein-protein interaction databases

    STRINGi4558.Sb03g011410.1.

    Structurei

    3D structure databases

    ProteinModelPortaliC5XHC8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the eIF-6 family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1976.
    HOGENOMiHOG000230605.
    KOiK03264.
    OMAiMAVNDWT.

    Family and domain databases

    HAMAPiMF_00032. eIF_6.
    InterProiIPR002769. eIF6.
    [Graphical view]
    PANTHERiPTHR10784. PTHR10784. 1 hit.
    PfamiPF01912. eIF-6. 1 hit.
    [Graphical view]
    PIRSFiPIRSF006413. IF-6. 1 hit.
    SMARTiSM00654. eIF6. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00323. eIF-6. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    C5XHC8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MASRVKFENS CEVGVFARLT NAYCLVPAGA ASQGFYSVLE GELAGAVPVV    50
    RTSVAGTRIV GRLCVGNKRG LLLPHTATDQ EIQHLRNSLP DEVVVKCVDE 100
    RLSALGNCIA CNDHVALTHP DLDKETEEVI SDVLGVEVFR QTIAGNILVG 150
    SYCTFTNKGG LVHPQTSVED LDELSTLLQV PMVAGTVNRG SEVVSAGMAV 200
    NDWTAFCGSD TTATEVSVVE SVFRLRDPRA GALGSVQDFF TSGAGLLPEP 250
    RQKTRLC 257
    Length:257
    Mass (Da):27,322
    Last modified:September 1, 2009 - v1
    Checksum:i6DD2937B50820C0F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000762 Genomic DNA. Translation: EES02790.1.
    RefSeqiXP_002457670.1. XM_002457625.1.
    UniGeneiSbi.5473.

    Genome annotation databases

    EnsemblPlantsiSb03g011410.1; Sb03g011410.1; Sb03g011410.
    GeneIDi8078117.
    KEGGisbi:SORBI_03g011410.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000762 Genomic DNA. Translation: EES02790.1 .
    RefSeqi XP_002457670.1. XM_002457625.1.
    UniGenei Sbi.5473.

    3D structure databases

    ProteinModelPortali C5XHC8.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 4558.Sb03g011410.1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi Sb03g011410.1 ; Sb03g011410.1 ; Sb03g011410 .
    GeneIDi 8078117.
    KEGGi sbi:SORBI_03g011410.

    Organism-specific databases

    Gramenei C5XHC8.

    Phylogenomic databases

    eggNOGi COG1976.
    HOGENOMi HOG000230605.
    KOi K03264.
    OMAi MAVNDWT.

    Family and domain databases

    HAMAPi MF_00032. eIF_6.
    InterProi IPR002769. eIF6.
    [Graphical view ]
    PANTHERi PTHR10784. PTHR10784. 1 hit.
    Pfami PF01912. eIF-6. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF006413. IF-6. 1 hit.
    SMARTi SM00654. eIF6. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00323. eIF-6. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. BTx623Imported.

    Entry informationi

    Entry nameiC5XHC8_SORBI
    AccessioniPrimary (citable) accession number: C5XHC8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 1, 2009
    Last sequence update: September 1, 2009
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3