C5XFN1 (C5XFN1_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein Sb03g009170 EMBL EES02668.1

Gene names

Name:	Sb03g009170 EMBL EES02668.1
ORF Names:	SORBIDRAFT_03g009170 EMBL EES02668.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	533 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	carboxylic acid metabolic process Inferred from electronic annotation. Source: InterPro sphingolipid catabolic process Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Cellular_component	endoplasmic reticulum Inferred from electronic annotation. Source: EnsemblPlants/Gramene membrane Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Molecular_function	carboxy-lyase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5XFN1 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: 47FD5686DE344931	FASTA	533	57,226
	10 20 30 40 50 60 MEAAAEMALR LRAAANDRLA GYEPLALVAA PLLALLVART LHAAANAVAD RGLVAIAIAA 70 80 90 100 110 120 VKLLPGVSGY IAAEKKKVVD KMQSGGAKND RRADLPTIGL GEQVIEELET LKAKDVDWQG 130 140 150 160 170 180 KCSGTVYIAG SESEGHFELI NKAVSMFSHT NPLHQDVFKS VANMEAEVVA MTAALLGSKE 190 200 210 220 230 240 KSSGGQICGN MTSGGTESIL LAVKTTRDYM RSKKGITKPE IIMAESAHSA YDKAAEYFNI 250 260 270 280 290 300 KVRRVPVNKE FLADVKGFKR CINGNTIMMI GSAPGFPHGL IDPIEELGEL ASRYDICLHI 310 320 330 340 350 360 DLCLGGFVLP FARKLGYPIP PFDFSVKGVT SISSDVHKYG LAPKGTSIVL YRNHEIRKHQ 370 380 390 400 410 420 FVAVTEWTGG LYVSPTMAGS RPGGLIAGAW AAMMSLGLNG YLDNTRCVME VSKKIQRGIG 430 440 450 460 470 480 EIPGLFVIGK PDMTIVAFGS DVVDIFEVND IMSSKGWHLN ALQRPNSLHI CVTLQHTTIY 490 500 510 520 530 DQFLKDLQDS VDTVKANPGP ISGGMAPIYG AAGKMPDRGT VRELLVEFMD SSC

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000762 Genomic DNA. Translation: EES02668.1.
RefSeq	XP_002457548.1. XM_002457503.1.
UniGene	Sbi.1148.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	4558.Sb03g009170.1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb03g009170.1; Sb03g009170.1; Sb03g009170.
GeneID	8072381.
KEGG	sbi:SORBI_03g009170.
Organism-specific databases
Gramene	C5XFN1.
Phylogenomic databases
eggNOG	COG0076.
HOGENOM	HOG000190693.
KO	K01634.
OMA	PQFPHGI.
ProtClustDB	CLSN2679351.
Family and domain databases
Gene3D	3.40.640.10. 1 hit.
InterPro	IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. [Graphical view]
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C5XFN1_SORBI

Accession

Primary (citable) accession number: C5XFN1

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	April 3, 2013
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)