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Protein

Structural maintenance of chromosomes protein

Gene

SORBI_3003G393100

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Structural maintenance of chromosomes proteinUniRule annotation
Gene namesi
ORF Names:SORBI_3003G393100Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogonodaeAndropogoneaeSorghinaeSorghum
Proteomesi
  • UP000000768 Componenti: Chromosome 3

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb03g043060.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini518 – 638SMC_hingeInterPro annotationAdd BLAST121

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili246 – 280Sequence analysisAdd BLAST35
Coiled coili352 – 386Sequence analysisAdd BLAST35
Coiled coili414 – 448Sequence analysisAdd BLAST35
Coiled coili672 – 699Sequence analysisAdd BLAST28
Coiled coili736 – 763Sequence analysisAdd BLAST28
Coiled coili789 – 872Sequence analysisAdd BLAST84
Coiled coili880 – 921Sequence analysisAdd BLAST42
Coiled coili967 – 1030Sequence analysisAdd BLAST64

Sequence similaritiesi

Belongs to the SMC family.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG0933. Eukaryota.
COG1196. LUCA.
HOGENOMiHOG000163792.
InParanoidiC5XFG9.
KOiK06674.
OMAiHNKIAME.
OrthoDBiEOG093600ZC.

Family and domain databases

CDDicd03273. ABC_SMC2_euk. 1 hit.
Gene3Di3.30.70.1340. 1 hit.
InterProiView protein in InterPro
IPR023129. MTH889-like_domain.
IPR027417. P-loop_NTPase.
IPR003395. RecF/RecN/SMC_N.
IPR024704. SMC.
IPR027120. Smc2_ABC.
IPR010935. SMC_hinge.
IPR036277. SMC_hinge_sf.
PfamiView protein in Pfam
PF06470. SMC_hinge. 1 hit.
PF02463. SMC_N. 2 hits.
PIRSFiPIRSF005719. SMC. 1 hit.
SMARTiView protein in SMART
SM00968. SMC_hinge. 1 hit.
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF75553. SSF75553. 1 hit.

Sequencei

Sequence statusi: Complete.

C5XFG9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHIKEVTLEG FKSYAGRTVV SGFDPLFNAI TGLNGSGKSN ILDSICFVLG
60 70 80 90 100
ITDLRQVRAA SLQELVYKQG QAGVTKATVS IVFDNSDRSR SPLGYEDSPE
110 120 130 140 150
ITVTRQIVVG GRNKYLINGH LAQPSRVQTL FHSVQLNVNN PHFLIMQGRI
160 170 180 190 200
TKVLNMKPPE ILSMLEEAAG TRMYEMKKES ALKTLEKKQN KVDEINKLLD
210 220 230 240 250
VEILPALEKL RKERCQYMKW ANGNAELDRL KRFCIAYEFV QAERVRDGAL
260 270 280 290 300
SDVKQIRAKI DELDENTETI KADIQEMDNN ISTLAAEKEA KEGGEMKLLS
310 320 330 340 350
DKVDKLSHVL IKETSVMNNQ EETLKSEEKG AEKILTNIED IKKSILERDA
360 370 380 390 400
AVKNVEIEAS DMKRRAEELT KELDEKEKEY QGVLAGKSSA SEKKCLEDQL
410 420 430 440 450
RDAKAAVGDA ESGLKQLATK IKHSEKELKE KKALLVSKRD EAIAAENELK
460 470 480 490 500
TRTKDLDGIK ASMGSINYDE GQMEALQKDR SMELEIGQKL KDRVRKLSGE
510 520 530 540 550
LANVHFSYRD PERNFDRSKV KGVVARLIRI KDSSTATALE VAAGGRLYNV
560 570 580 590 600
VVDTEETGKQ LLKNGDLRSR VTIIPLNKIQ TYTIPDRVQQ AARRLVGPDN
610 620 630 640 650
VTLALELVGY GEEVKNAVAY VFGSTFVCRN MDAAKEVAFN REVSSTSVTL
660 670 680 690 700
EGDTYQPSGL LTGGSKGGRG NLLRKLDELA KAEADLSDHE KRLSVIEQQI
710 720 730 740 750
GALLPLQKRY TELKSQFELK SYDLSLFQSR VEQNEHHKLG ELVKKIEQEL
760 770 780 790 800
QESTQELTEK EVQHERCVST VSELETTIKT YGTEREGRLK ALEKRIKSIK
810 820 830 840 850
SEMQSMSKQL KAYESDRERL IMEKDAVANE LATLEEQLTT SKAQITSLSE
860 870 880 890 900
TLEKQKDKVT SIKQDYDQAE SELNVGRSKL KECDSQINRM AKEQQKLQQK
910 920 930 940 950
LSDSNVERKK MENEVKRMEI EQKDCSSIVD KLLEKYSWIV TEKQLFGKSG
960 970 980 990 1000
TDYDFHSCEP HKAREELENL QAQQSSLEKR VNKKVMAMFE KAEDEYNDLM
1010 1020 1030 1040 1050
SKKNIIENDK AKIKNVIEEL DEKKKETLKV TWLKVNKDFG SIFSTLLPGT
1060 1070 1080 1090 1100
MAKLDPPEGG TFLDGLEVRV AFGTVWKQSL SELSGGQRSL LALSLILALL
1110 1120 1130 1140 1150
LFKPAPLYIL DEVDAALDLS HTQNIGRMIK AHFPHSQFIV VSLKEGMFNN
1160 1170
ANVIFRTKFV DGVSTVTRTV PSKQR
Length:1,175
Mass (Da):132,483
Last modified:September 1, 2009 - v1
Checksum:i6D4F363D5D88BA35
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000762 Genomic DNA. Translation: EES04059.1.
RefSeqiXP_002458939.1. XM_002458894.1.
UniGeneiSbi.11693.

Genome annotation databases

EnsemblPlantsiEES04059; EES04059; SORBI_003G393100.
GeneIDi8078694.
GrameneiEES04059; EES04059; SORBI_003G393100.
KEGGisbi:8078694.

Similar proteinsi

Entry informationi

Entry nameiC5XFG9_SORBI
AccessioniPrimary (citable) accession number: C5XFG9
Entry historyiIntegrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: October 25, 2017
This is version 52 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported