C5XBV0 (C5XBV0_SORBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein Sb02g005200 EMBL EER95994.1

Gene names

Name:	Sb02g005200 EMBL EER95994.1
ORF Names:	SORBIDRAFT_02g005200 EMBL EER95994.1

Organism

Sorghum bicolor (Sorghum) (Sorghum vulgare)

Taxonomic identifier

4558 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Sorghum

Protein attributes

Sequence length	540 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the aldehyde dehydrogenase family. RuleBase RU003345

Ontologies

Keywords
Molecular function	Oxidoreductase RuleBase RU003344
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular function	methylmalonate-semialdehyde dehydrogenase (acylating) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C5XBV0 [UniParc]. Last modified September 1, 2009. Version 1. Checksum: DFD80A719343F583	FASTA	540	57,840
	10 20 30 40 50 60 MLRAALFRSA PGLRRSPAMA AAAAPFSTAA AAAAWLSNGP ASTPPRVRLL IGGEFVESRA 70 80 90 100 110 120 DEHVDVTNPA TQEVVSRIPL TTADEFRAAV DAARTAFPGW RNTPVTTRQR VMFKFQELIR 130 140 150 160 170 180 ANMDKLAENI TTEQGKTLKD AWGDVFRGLE VVEHACGMGT LQMGEYVSNV SNGIDTFSIR 190 200 210 220 230 240 EPLGVCAGIC PFNFPAMIPL WMFPIAVTCG NTFVLKPSEK DPGAAMMLAE LAMEAGLPKG 250 260 270 280 290 300 VLNIVHGTND VVNNICDDED IKAVSFVGSN TAGMHIYSRA SAAGKRVQCN MGAKNHAIIL 310 320 330 340 350 360 PDADRDATLN ALIAAGFGAA GQRCMALSTA VFVGGSESWE DELVNRASGL IVNSGMVNDA 370 380 390 400 410 420 DLGPVISRQA KDRICKLVQS GVDSGARILL DGRKIVVPQY EDGNFVGPTI LADVKSDMEC 430 440 450 460 470 480 YKEEIFGPVL LLMKAESLDD AIQIINRNKY GNGASIFTTS GVYARKFQTD IEAGQVGINV 490 500 510 520 530 540 PIPVPLPFFS FTGSKASFAG DLNFYGKAGV QFFTQIKTIT QQWKESPAQR VSLSMPTSQK

References

[1]

"The Sorghum bicolor genome and the diversification of grasses." Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J., Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J., Feltus F.A. , Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M., Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L., Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P., Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman M., Ware D., Westhoff P., Mayer K.F.X., Messing J., Rokhsar D.S. Nature 457:551-556(2009) [PubMed: 19189423] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. BTx623.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000761 Genomic DNA. Translation: EER95994.1.
RefSeq	XP_002459473.1. XM_002459428.1.
UniGene	Sbi.14860.
3D structure databases
ProteinModelPortal	C5XBV0.
ModBase	Search...
Protein-protein interaction databases
STRING	C5XBV0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Sb02g005200.1; Sb02g005200.1; Sb02g005200.
GeneID	8075050.
KEGG	sbi:SORBI_02g005200.
Phylogenomic databases
GeneTree	EPGT00070000029341.
OMA	IISNVKP.
PhylomeDB	C5XBV0.
ProtClustDB	CLSN2696596.
Family and domain databases
InterPro	IPR016161. Ald_DH/histidinol_DH. IPR016163. Ald_DH_C. IPR016160. Ald_DH_CS. IPR016162. Ald_DH_N. IPR015590. Aldehyde_DH_dom. IPR010061. MeMal-semiAld_DH. [Graphical view]
Gene3D	G3DSA:3.40.309.10. Aldehyde_dehydrogenase_C. 1 hit. G3DSA:3.40.605.10. Aldehyde_dehydrogenase_N. 1 hit.
KO	K00140.
PANTHER	PTHR11699:SF27. MMSDH. 1 hit.
Pfam	PF00171. Aldedh. 1 hit. [Graphical view]
SUPFAM	SSF53720. Aldehyde_DH/Histidinol_DH. 1 hit.
TIGRFAMs	TIGR01722. MMSDH. 1 hit.
PROSITE	PS00070. ALDEHYDE_DEHYDR_CYS. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C5XBV0_SORBI

Accession

Primary (citable) accession number: C5XBV0

Entry history

Integrated into UniProtKB/TrEMBL:	September 1, 2009
Last sequence update:	September 1, 2009
Last modified:	December 14, 2011
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)