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Protein

Auxin-responsive protein

Gene

SORBI_3002G055900

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.UniRule annotationSAAS annotation

GO - Biological processi

Keywordsi

Molecular functionRepressorUniRule annotationSAAS annotation
Biological processAuxin signaling pathwayUniRule annotationSAAS annotation, Transcription, Transcription regulationUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Auxin-responsive proteinUniRule annotation
Gene namesi
ORF Names:SORBI_3002G055900Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogonodaeAndropogoneaeSorghinaeSorghum
Proteomesi
  • UP000000768 Componenti: Chromosome 2

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Homodimers and heterodimers.UniRule annotationSAAS annotation

Protein-protein interaction databases

STRINGi4558.Sb02g004670.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini110 – 195PB1InterPro annotationAdd BLAST86

Sequence similaritiesi

Belongs to the Aux/IAA family.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG410IX07. Eukaryota.
ENOG410YIDV. LUCA.
HOGENOMiHOG000238261.
InParanoidiC5XB42.
KOiK14484.
OMAiQHAIAYE.
OrthoDBiEOG09360PSB.

Family and domain databases

InterProiView protein in InterPro
IPR033389. AUX/IAA_dom.
IPR003311. AUX_IAA.
IPR000270. PB1_dom.
PANTHERiPTHR31734. PTHR31734. 1 hit.
PfamiView protein in Pfam
PF02309. AUX_IAA. 1 hit.
PROSITEiView protein in PROSITE
PS51745. PB1. 1 hit.

Sequencei

Sequence statusi: Complete.

C5XB42-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEIVDADNLS ATELRLGLPG TSSSDDWQKK PSPSVGAKRA LDDTRSEASG
60 70 80 90 100
TSSPATAADL DLDHDHDAAP PPKAQVVGWP PVRAYRKNTF QAAAAAAKKA
110 120 130 140 150
DQQQQQQGGG LYVKVSMDGA PYLRKVDLRM YKGYRELREA LDALFTKSFS
160 170 180 190
AAAAEGGDHQ HAIAYEDKDG DLMLVGDVPW DMFISSCKKL RIMKGSEAR
Length:199
Mass (Da):21,524
Last modified:September 1, 2009 - v1
Checksum:iCD490CAEED2529EA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000761 Genomic DNA. Translation: EER98076.1.
RefSeqiXP_002461555.1. XM_002461510.1.

Genome annotation databases

EnsemblPlantsiEER98076; EER98076; SORBI_002G055900.
GeneIDi8056625.
GrameneiEER98076; EER98076; SORBI_002G055900.
KEGGisbi:8056625.

Similar proteinsi

Entry informationi

Entry nameiC5XB42_SORBI
AccessioniPrimary (citable) accession number: C5XB42
Entry historyiIntegrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: November 22, 2017
This is version 53 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported