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Protein
Submitted name:

Uncharacterized protein

Gene

SORBI_3002G145000

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:SORBI_3002G145000Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogonodaeAndropogoneaeSorghinaeSorghum
Proteomesi
  • UP000000768 Componenti: Chromosome 2

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi4558.Sb02g014460.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini24 – 312RPOLDInterPro annotationAdd BLAST289

Phylogenomic databases

eggNOGiKOG1522. Eukaryota.
COG0202. LUCA.
HOGENOMiHOG000230844.
InParanoidiC5X7D7.
KOiK03011.
OMAiCSVEFPL.
OrthoDBiEOG09360HHP.

Family and domain databases

Gene3Di3.30.1360.10. 2 hits.
InterProiView protein in InterPro
IPR001514. DNA-dir_RNA_pol_30-40kDasu_CS.
IPR011262. DNA-dir_RNA_pol_insert.
IPR011263. DNA-dir_RNA_pol_RpoA/D/Rpb3.
IPR036603. RBP11-like.
IPR036643. RNApol_insert_sf.
PfamiView protein in Pfam
PF01000. RNA_pol_A_bac. 1 hit.
PF01193. RNA_pol_L. 1 hit.
SMARTiView protein in SMART
SM00662. RPOLD. 1 hit.
SUPFAMiSSF55257. SSF55257. 2 hits.
SSF56553. SSF56553. 1 hit.
PROSITEiView protein in PROSITE
PS00446. RNA_POL_D_30KD. 1 hit.

Sequencei

Sequence statusi: Complete.

C5X7D7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDRPVGASYQ RFPRVRIRDL KDDYAKFELR DTDASMANAL RRVMIAEVPT
60 70 80 90 100
VAIDLVEIEV NSSVLNDEFI AHRLGLIPLT SAAAMQMRFS RDCDACDGDG
110 120 130 140 150
SCEYCSVEFH LAARATDSDQ TLEVTSNDLR SMDPKVCPVD QARAYQQALG
160 170 180 190 200
GTDPFGANTS NENRGILIVK LRRGQELRLR AIARKGIGKD HAKWSPAATV
210 220 230 240 250
TFMYEPDIRI NEELMETLTV EERRRLIESS PTKVFKLDSA NQVVVDNAEA
260 270 280 290 300
YTYDDEVIKH AEALGKPGLV EINAKEDSFI FTVETTGAIT AYELIMNAIT
310 320
VLRQKLDAVR LQDDDGDLGE LGAHLGGP
Length:328
Mass (Da):36,371
Last modified:September 1, 2009 - v1
Checksum:iAE9214593D87FC8D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000761 Genomic DNA. Translation: EER98576.1.
RefSeqiXP_002462055.1. XM_002462010.1.
UniGeneiSbi.1701.

Genome annotation databases

EnsemblPlantsiEER98576; EER98576; SORBI_002G145000.
GeneIDi8063422.
GrameneiEER98576; EER98576; SORBI_002G145000.
KEGGisbi:8063422.

Similar proteinsi

Entry informationi

Entry nameiC5X7D7_SORBI
AccessioniPrimary (citable) accession number: C5X7D7
Entry historyiIntegrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: October 25, 2017
This is version 50 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported